Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 snoU13.14-201ENST00000459372 104 ntBASIC2.32□□□□□ -2.04
MSH3P20585 RPL22P13-201ENST00000493291 347 ntBASIC2.32□□□□□ -2.04
MSH3P20585 AC022447.4-201ENST00000504053 364 ntBASIC2.32□□□□□ -2.04
MSH3P20585 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.32□□□□□ -2.04
MSH3P20585 HSPE1P4-201ENST00000550617 308 ntBASIC2.32□□□□□ -2.04
MSH3P20585 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.32□□□□□ -2.04
MSH3P20585 MIR3199-1-201ENST00000582434 88 ntBASIC2.32□□□□□ -2.04
MSH3P20585 AC005899.2-201ENST00000584353 90 ntBASIC2.32□□□□□ -2.04
MSH3P20585 AL158827.2-201ENST00000602494 330 ntBASIC2.32□□□□□ -2.04
MSH3P20585 AL691447.3-201ENST00000635020 330 ntBASIC2.32□□□□□ -2.04
MSH3P20585 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.32□□□□□ -2.04
MSH3P20585 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
MSH3P20585 MTND4P27-201ENST00000450813 1354 ntBASIC2.32□□□□□ -2.04
MSH3P20585 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
MSH3P20585 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
MSH3P20585 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
MSH3P20585 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
MSH3P20585 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
MSH3P20585 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.32□□□□□ -2.04
MSH3P20585 MTND5P30-201ENST00000452896 1731 ntBASIC2.31□□□□□ -2.04
MSH3P20585 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.31□□□□□ -2.04
MSH3P20585 Z75746.1-201ENST00000440243 2080 ntBASIC2.31□□□□□ -2.04
MSH3P20585 RNA5SP289-201ENST00000362332 137 ntBASIC2.31□□□□□ -2.04
MSH3P20585 Y_RNA.48-201ENST00000362710 103 ntBASIC2.31□□□□□ -2.04
MSH3P20585 Y_RNA.146-201ENST00000363549 102 ntBASIC2.31□□□□□ -2.04
MSH3P20585 RNU1-51P-201ENST00000365345 176 ntBASIC2.31□□□□□ -2.04
MSH3P20585 Y_RNA.533-201ENST00000384596 114 ntBASIC2.31□□□□□ -2.04
MSH3P20585 MIR186-201ENST00000384988 86 ntBASIC2.31□□□□□ -2.04
MSH3P20585 RNU6-220P-201ENST00000390919 107 ntBASIC2.31□□□□□ -2.04
MSH3P20585 EIF1AXP1-201ENST00000419267 435 ntBASIC2.31□□□□□ -2.04
MSH3P20585 AIMP1P2-201ENST00000425294 312 ntBASIC2.31□□□□□ -2.04
MSH3P20585 AC244670.1-201ENST00000436879 112 ntBASIC2.31□□□□□ -2.04
MSH3P20585 SNRPGP7-201ENST00000469016 106 ntBASIC2.31□□□□□ -2.04
MSH3P20585 AC104564.1-201ENST00000493028 407 ntBASIC2.31□□□□□ -2.04
MSH3P20585 AC023141.11-201ENST00000508864 202 ntBASIC2.31□□□□□ -2.04
MSH3P20585 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.31□□□□□ -2.04
MSH3P20585 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.31□□□□□ -2.04
MSH3P20585 AC093303.1-201ENST00000514549 295 ntBASIC2.31□□□□□ -2.04
MSH3P20585 SNORA25.11-201ENST00000515935 105 ntBASIC2.31□□□□□ -2.04
MSH3P20585 RNA5SP112-201ENST00000515937 99 ntBASIC2.31□□□□□ -2.04
MSH3P20585 IGLV3-17-201ENST00000519099 244 ntBASIC2.31□□□□□ -2.04
MSH3P20585 AC115990.1-201ENST00000526957 301 ntBASIC2.31□□□□□ -2.04
MSH3P20585 CBX3P8-201ENST00000532412 525 ntBASIC2.31□□□□□ -2.04
MSH3P20585 MRPS36P4-201ENST00000534436 298 ntBASIC2.31□□□□□ -2.04
MSH3P20585 AC073410.2-201ENST00000603240 332 ntBASIC2.31□□□□□ -2.04
MSH3P20585 AC005014.2-201ENST00000607795 599 ntBASIC2.31□□□□□ -2.04
MSH3P20585 MIR6895-201ENST00000613497 78 ntBASIC2.31□□□□□ -2.04
MSH3P20585 AC133104.2-201ENST00000615272 193 ntBASIC2.31□□□□□ -2.04
MSH3P20585 HMGB1P24-202ENST00000615653 685 ntBASIC2.31□□□□□ -2.04
MSH3P20585 MIR203B-201ENST00000636080 86 ntBASIC2.31□□□□□ -2.04
MSH3P20585 AL450472.1-202ENST00000637286 180 ntBASIC2.31□□□□□ -2.04
MSH3P20585 MTND5P9-201ENST00000503854 1755 ntBASIC2.31□□□□□ -2.04
MSH3P20585 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.31□□□□□ -2.04
MSH3P20585 AP000560.1-201ENST00000624150 1937 ntBASIC2.3□□□□□ -2.04
MSH3P20585 Y_RNA.394-201ENST00000383942 103 ntBASIC2.3□□□□□ -2.04
MSH3P20585 Y_RNA.504-201ENST00000384481 104 ntBASIC2.3□□□□□ -2.04
MSH3P20585 RNU1-57P-201ENST00000384491 166 ntBASIC2.3□□□□□ -2.04
MSH3P20585 SNORA67.4-201ENST00000384688 142 ntBASIC2.3□□□□□ -2.04
MSH3P20585 MIR524-201ENST00000385242 87 ntBASIC2.3□□□□□ -2.04
MSH3P20585 SNORA26.3-201ENST00000391119 136 ntBASIC2.3□□□□□ -2.04
MSH3P20585 AC243428.1-201ENST00000421099 264 ntBASIC2.3□□□□□ -2.04
MSH3P20585 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.3□□□□□ -2.04
MSH3P20585 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.3□□□□□ -2.04
MSH3P20585 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.3□□□□□ -2.04
MSH3P20585 AL513124.1-201ENST00000450410 614 ntBASIC2.3□□□□□ -2.04
MSH3P20585 AC027575.1-201ENST00000481064 460 ntBASIC2.3□□□□□ -2.04
MSH3P20585 RPL30P1-201ENST00000488676 339 ntBASIC2.3□□□□□ -2.04
MSH3P20585 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.3□□□□□ -2.04
MSH3P20585 AC016632.1-201ENST00000503994 196 ntBASIC2.3□□□□□ -2.04
MSH3P20585 RNU6-307P-201ENST00000516743 106 ntBASIC2.3□□□□□ -2.04
MSH3P20585 AC016256.1-201ENST00000547971 354 ntBASIC2.3□□□□□ -2.04
MSH3P20585 AC121758.2-201ENST00000553271 193 ntBASIC2.3□□□□□ -2.04
MSH3P20585 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.3□□□□□ -2.04
MSH3P20585 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.3□□□□□ -2.04
MSH3P20585 AC093249.1-201ENST00000567049 203 ntBASIC2.3□□□□□ -2.04
MSH3P20585 MIR5571-201ENST00000577998 113 ntBASIC2.3□□□□□ -2.04
MSH3P20585 MIR4435-1-201ENST00000582552 80 ntBASIC2.3□□□□□ -2.04
MSH3P20585 AC080078.3-201ENST00000605407 463 ntBASIC2.3□□□□□ -2.04
MSH3P20585 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.3□□□□□ -2.04
MSH3P20585 MIR7157-201ENST00000635801 60 ntBASIC2.3□□□□□ -2.04
MSH3P20585 ZNF299P-201ENST00000406845 1804 ntBASIC2.3□□□□□ -2.04
MSH3P20585 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
MSH3P20585 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
MSH3P20585 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.29□□□□□ -2.04
MSH3P20585 MTND5P10-201ENST00000603719 1809 ntBASIC2.29□□□□□ -2.04
MSH3P20585 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
MSH3P20585 AC092268.1-201ENST00000342691 405 ntBASIC2.29□□□□□ -2.04
MSH3P20585 RNU6-212P-201ENST00000362642 104 ntBASIC2.29□□□□□ -2.04
MSH3P20585 RNU6-486P-201ENST00000363116 107 ntBASIC2.29□□□□□ -2.04
MSH3P20585 RNU6-595P-201ENST00000363944 107 ntBASIC2.29□□□□□ -2.04
MSH3P20585 RNU6-1286P-201ENST00000383871 107 ntBASIC2.29□□□□□ -2.04
MSH3P20585 RNU6-142P-201ENST00000384019 107 ntBASIC2.29□□□□□ -2.04
MSH3P20585 MIR218-1-201ENST00000384999 110 ntBASIC2.29□□□□□ -2.04
MSH3P20585 EIF4EP4-201ENST00000424916 578 ntBASIC2.29□□□□□ -2.04
MSH3P20585 AC008267.5-201ENST00000424928 265 ntBASIC2.29□□□□□ -2.04
MSH3P20585 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.29□□□□□ -2.04
MSH3P20585 RPS15AP28-201ENST00000435088 386 ntBASIC2.29□□□□□ -2.04
MSH3P20585 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.29□□□□□ -2.04
MSH3P20585 RNU7-26P-201ENST00000458980 63 ntBASIC2.29□□□□□ -2.04
MSH3P20585 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms