Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
LIG1P18858 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIG1P18858 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.04□□□□□ -1.76
LIG1P18858 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC4.03□□□□□ -1.76
LIG1P18858 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
LIG1P18858 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC4.03□□□□□ -1.76
LIG1P18858 SNORA26.3-201ENST00000391119 136 ntBASIC4.03□□□□□ -1.76
LIG1P18858 AC244670.1-201ENST00000436879 112 ntBASIC4.03□□□□□ -1.76
LIG1P18858 AC010095.1-201ENST00000443543 144 ntBASIC4.03□□□□□ -1.76
LIG1P18858 AC005042.3-201ENST00000453230 174 ntBASIC4.03□□□□□ -1.76
LIG1P18858 AP000705.1-201ENST00000454567 350 ntBASIC4.03□□□□□ -1.76
LIG1P18858 AL031183.1-201ENST00000457667 207 ntBASIC4.03□□□□□ -1.76
LIG1P18858 SNRPGP7-201ENST00000469016 106 ntBASIC4.03□□□□□ -1.76
LIG1P18858 AC092185.1-201ENST00000491371 97 ntBASIC4.03□□□□□ -1.76
LIG1P18858 RN7SKP18-201ENST00000516005 275 ntBASIC4.03□□□□□ -1.76
LIG1P18858 AC009163.5-201ENST00000575421 637 ntBASIC4.03□□□□□ -1.76
LIG1P18858 AC108706.1-201ENST00000611053 297 ntBASIC4.03□□□□□ -1.76
LIG1P18858 AL357075.2-201ENST00000614906 189 ntBASIC4.03□□□□□ -1.76
LIG1P18858 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.03□□□□□ -1.76
LIG1P18858 BX322639.1-202ENST00000423987 2213 ntBASIC4.03□□□□□ -1.76
LIG1P18858 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIG1P18858 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.03□□□□□ -1.76
LIG1P18858 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC4.03□□□□□ -1.76
LIG1P18858 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
LIG1P18858 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
LIG1P18858 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.02□□□□□ -1.77
LIG1P18858 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIG1P18858 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIG1P18858 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.02□□□□□ -1.77
LIG1P18858 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LIG1P18858 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.02□□□□□ -1.77
LIG1P18858 Y_RNA.304-201ENST00000365011 112 ntBASIC4.02□□□□□ -1.77
LIG1P18858 RNU6-1280P-201ENST00000365211 107 ntBASIC4.02□□□□□ -1.77
LIG1P18858 RNU6-81P-201ENST00000365608 104 ntBASIC4.02□□□□□ -1.77
LIG1P18858 SNORA36A-201ENST00000384221 132 ntBASIC4.02□□□□□ -1.77
LIG1P18858 RNU6-804P-201ENST00000384286 107 ntBASIC4.02□□□□□ -1.77
LIG1P18858 RPS29P4-201ENST00000414733 161 ntBASIC4.02□□□□□ -1.77
LIG1P18858 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.02□□□□□ -1.77
LIG1P18858 AC112220.1-201ENST00000434628 355 ntBASIC4.02□□□□□ -1.77
LIG1P18858 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.02□□□□□ -1.77
LIG1P18858 RPL23AP3-201ENST00000453844 468 ntBASIC4.02□□□□□ -1.77
LIG1P18858 RPS27AP10-201ENST00000496103 208 ntBASIC4.02□□□□□ -1.77
LIG1P18858 AC074133.1-201ENST00000515696 183 ntBASIC4.02□□□□□ -1.77
LIG1P18858 SNORA70.18-201ENST00000516696 98 ntBASIC4.02□□□□□ -1.77
LIG1P18858 MTND5P41-201ENST00000517498 206 ntBASIC4.02□□□□□ -1.77
LIG1P18858 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC4.02□□□□□ -1.77
LIG1P18858 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.02□□□□□ -1.77
LIG1P18858 AC074050.1-201ENST00000563247 211 ntBASIC4.02□□□□□ -1.77
LIG1P18858 AL078605.1-201ENST00000603529 500 ntBASIC4.02□□□□□ -1.77
LIG1P18858 AP001485.1-201ENST00000604799 199 ntBASIC4.02□□□□□ -1.77
LIG1P18858 MIR3529-201ENST00000637713 78 ntBASIC4.02□□□□□ -1.77
LIG1P18858 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIG1P18858 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.02□□□□□ -1.77
LIG1P18858 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
LIG1P18858 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
LIG1P18858 RNU6-1285P-201ENST00000363480 105 ntBASIC4.01□□□□□ -1.77
LIG1P18858 RNU6-873P-201ENST00000363833 107 ntBASIC4.01□□□□□ -1.77
LIG1P18858 RNU6-923P-201ENST00000364753 107 ntBASIC4.01□□□□□ -1.77
LIG1P18858 RNU6-1027P-201ENST00000383998 107 ntBASIC4.01□□□□□ -1.77
LIG1P18858 RNA5SP390-201ENST00000410191 113 ntBASIC4.01□□□□□ -1.77
LIG1P18858 Y_RNA.597-201ENST00000410463 100 ntBASIC4.01□□□□□ -1.77
LIG1P18858 RNU6-1135P-201ENST00000411083 103 ntBASIC4.01□□□□□ -1.77
LIG1P18858 HMGN2P31-201ENST00000432430 273 ntBASIC4.01□□□□□ -1.77
LIG1P18858 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.01□□□□□ -1.77
LIG1P18858 RPL32P34-201ENST00000486380 400 ntBASIC4.01□□□□□ -1.77
LIG1P18858 RNU2-27P-201ENST00000516185 142 ntBASIC4.01□□□□□ -1.77
LIG1P18858 RNY3P16-201ENST00000516338 101 ntBASIC4.01□□□□□ -1.77
LIG1P18858 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC4.01□□□□□ -1.77
LIG1P18858 MIR4308-201ENST00000580634 81 ntBASIC4.01□□□□□ -1.77
LIG1P18858 MIR3922-201ENST00000585192 84 ntBASIC4.01□□□□□ -1.77
LIG1P18858 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC4.01□□□□□ -1.77
LIG1P18858 AC009093.8-201ENST00000641769 292 ntBASIC4.01□□□□□ -1.77
LIG1P18858 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
LIG1P18858 AC093908.1-201ENST00000623125 8092 ntBASIC4.01□□□□□ -1.77
LIG1P18858 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
LIG1P18858 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.01□□□□□ -1.77
LIG1P18858 AC110491.1-201ENST00000562191 2010 ntBASIC4□□□□□ -1.77
LIG1P18858 AL161912.2-201ENST00000565707 3007 ntBASIC4□□□□□ -1.77
LIG1P18858 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
LIG1P18858 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC4□□□□□ -1.77
LIG1P18858 SNORD9-201ENST00000362566 104 ntBASIC4□□□□□ -1.77
LIG1P18858 Y_RNA.262-201ENST00000364641 102 ntBASIC4□□□□□ -1.77
LIG1P18858 Y_RNA.308-201ENST00000365043 101 ntBASIC4□□□□□ -1.77
LIG1P18858 RNU6-487P-201ENST00000365430 104 ntBASIC4□□□□□ -1.77
LIG1P18858 Y_RNA.441-201ENST00000384123 112 ntBASIC4□□□□□ -1.77
LIG1P18858 RNA5SP171-201ENST00000391071 115 ntBASIC4□□□□□ -1.77
LIG1P18858 AL451074.5-201ENST00000415894 435 ntBASIC4□□□□□ -1.77
LIG1P18858 OOSP1P1-201ENST00000423265 274 ntBASIC4□□□□□ -1.77
LIG1P18858 AC012306.1-201ENST00000423267 114 ntBASIC4□□□□□ -1.77
LIG1P18858 AL357552.1-201ENST00000445254 415 ntBASIC4□□□□□ -1.77
LIG1P18858 HMGN2P10-201ENST00000448085 265 ntBASIC4□□□□□ -1.77
LIG1P18858 AC091179.1-201ENST00000461606 579 ntBASIC4□□□□□ -1.77
LIG1P18858 AC021205.2-201ENST00000480069 347 ntBASIC4□□□□□ -1.77
LIG1P18858 RNU6-1219P-201ENST00000516143 112 ntBASIC4□□□□□ -1.77
LIG1P18858 AC026403.1-201ENST00000518938 295 ntBASIC4□□□□□ -1.77
LIG1P18858 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4□□□□□ -1.77
LIG1P18858 AC005828.6-201ENST00000606610 232 ntBASIC4□□□□□ -1.77
LIG1P18858 AL359198.2-201ENST00000611836 194 ntBASIC4□□□□□ -1.77
LIG1P18858 FAM35BP-202ENST00000497389 3337 ntBASIC4□□□□□ -1.77
LIG1P18858 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms