Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 Z82188.1-201ENST00000436709 154 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 Z96811.1-201ENST00000445880 108 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 RPL37P4-201ENST00000448908 268 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 AL138752.1-201ENST00000452964 351 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 U8.22-201ENST00000459141 133 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 MED28P2-201ENST00000475771 317 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 SEM1P1-201ENST00000506694 209 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A1P12109 MIR4659A-201ENST00000580269 81 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 HMGN2P15-201ENST00000585707 270 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 ELOCP29-201ENST00000588193 334 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 AC010620.2-201ENST00000600135 313 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.56□□□□□ -1.84
COL6A1P12109 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.56□□□□□ -1.84
COL6A1P12109 MIR622-201ENST00000638396 96 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.56□□□□□ -1.84
COL6A1P12109 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.56□□□□□ -1.84
COL6A1P12109 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A1P12109 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A1P12109 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.55□□□□□ -1.84
COL6A1P12109 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
COL6A1P12109 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.55□□□□□ -1.84
COL6A1P12109 RNU4-82P-201ENST00000362443 140 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 Y_RNA.270-201ENST00000364693 104 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 Y_RNA.277-201ENST00000364754 102 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 RNU6-1286P-201ENST00000383871 107 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 RNU6-17P-201ENST00000384245 107 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 RNU6-843P-201ENST00000384454 104 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 RNU6-18P-201ENST00000384527 107 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 MIR153-2-201ENST00000385225 87 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 Y_RNA.602-201ENST00000410535 92 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 AC126124.2-201ENST00000413542 321 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 RPL26P27-201ENST00000414397 437 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 AL365496.1-201ENST00000426885 215 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.55□□□□□ -1.84
COL6A1P12109 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.55□□□□□ -1.84
COL6A1P12109 RPS4XP2-201ENST00000458402 793 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 RPS29P26-201ENST00000477483 171 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 RPL23AP75-201ENST00000491601 451 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.55□□□□□ -1.84
COL6A1P12109 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.55□□□□□ -1.84
COL6A1P12109 MRPS36P4-201ENST00000534436 298 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 NACAP3-201ENST00000552100 481 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.55□□□□□ -1.84
COL6A1P12109 RPL23AP88-201ENST00000605759 454 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 AC024581.2-201ENST00000619986 252 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 AC097372.5-201ENST00000623665 376 ntBASIC3.55□□□□□ -1.84
COL6A1P12109 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.55□□□□□ -1.84
COL6A1P12109 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.54□□□□□ -1.84
COL6A1P12109 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A1P12109 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.54□□□□□ -1.84
COL6A1P12109 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A1P12109 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A1P12109 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A1P12109 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A1P12109 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A1P12109 SNORD113-8-201ENST00000363497 74 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 RNU6-142P-201ENST00000384019 107 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 MIR32-201ENST00000384965 70 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A1P12109 AL033519.2-201ENST00000403958 392 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 MIR1261-201ENST00000408659 82 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 RNA5SP229-201ENST00000410809 99 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 RNU2-14P-201ENST00000411053 191 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 EEF1A1P41-201ENST00000414667 207 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.54□□□□□ -1.84
COL6A1P12109 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A1P12109 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.54□□□□□ -1.84
COL6A1P12109 AL135938.1-201ENST00000443141 297 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.54□□□□□ -1.84
COL6A1P12109 AC107934.2-201ENST00000518653 310 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.54□□□□□ -1.84
COL6A1P12109 AC023824.2-201ENST00000566185 400 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 AC010928.2-201ENST00000588017 287 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 FTX_2.1-201ENST00000618816 94 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 AC137590.2-201ENST00000619709 240 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A1P12109 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A1P12109 AL136360.1-201ENST00000503377 1900 ntBASIC3.54□□□□□ -1.84
COL6A1P12109 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.54□□□□□ -1.84
COL6A1P12109 AC026241.1-201ENST00000517873 2142 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A1P12109 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.53□□□□□ -1.84
COL6A1P12109 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
COL6A1P12109 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A1P12109 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.53□□□□□ -1.84
COL6A1P12109 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.53□□□□□ -1.84
COL6A1P12109 Y_RNA.16-201ENST00000362421 102 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 RNU6-222P-201ENST00000362438 107 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 Y_RNA.180-201ENST00000363867 113 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 Y_RNA.200-201ENST00000364018 102 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 RNU6-879P-201ENST00000364328 108 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 SNORA71.1-201ENST00000364523 117 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 RNU6-898P-201ENST00000365627 104 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 Y_RNA.541-201ENST00000384640 113 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.53□□□□□ -1.84
COL6A1P12109 AC009414.1-201ENST00000427200 443 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 AC016700.2-201ENST00000446011 156 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms