Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.87□□□□□ -1.95
HMGB1P09429 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.87□□□□□ -1.95
HMGB1P09429 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.87□□□□□ -1.95
HMGB1P09429 TPRKBP2-201ENST00000565969 475 ntBASIC2.87□□□□□ -1.95
HMGB1P09429 MIR1291-201ENST00000627649 87 ntBASIC2.87□□□□□ -1.95
HMGB1P09429 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HMGB1P09429 CENPCP1-201ENST00000533085 2578 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 AL159152.1-201ENST00000635019 2587 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 RNU6-562P-201ENST00000362731 107 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 RNU6-784P-201ENST00000384330 106 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 RNU6-95P-201ENST00000384697 107 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 ZNF885P-201ENST00000420174 1098 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.86□□□□□ -1.95
HMGB1P09429 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.86□□□□□ -1.95
HMGB1P09429 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
HMGB1P09429 FAM206BP-201ENST00000510179 541 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 RNA5SP148-201ENST00000516527 94 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 GNAI2P1-201ENST00000541815 315 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 MIR5094-201ENST00000578766 85 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 POLR3GP2-201ENST00000588366 668 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 AL138726.1-201ENST00000614873 333 ntBASIC2.86□□□□□ -1.95
HMGB1P09429 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
HMGB1P09429 Y_RNA.100-201ENST00000363141 102 ntBASIC2.85□□□□□ -1.95
HMGB1P09429 SNORD114-30-201ENST00000364448 72 ntBASIC2.85□□□□□ -1.95
HMGB1P09429 Y_RNA.414-201ENST00000384011 101 ntBASIC2.85□□□□□ -1.95
HMGB1P09429 Y_RNA.450-201ENST00000384198 113 ntBASIC2.85□□□□□ -1.95
HMGB1P09429 Y_RNA.516-201ENST00000384541 124 ntBASIC2.85□□□□□ -1.95
HMGB1P09429 Y_RNA.573-201ENST00000384763 105 ntBASIC2.85□□□□□ -1.95
HMGB1P09429 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
HMGB1P09429 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.85□□□□□ -1.95
HMGB1P09429 AL513124.1-201ENST00000450410 614 ntBASIC2.85□□□□□ -1.95
HMGB1P09429 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.85□□□□□ -1.95
HMGB1P09429 RNA5SP402-201ENST00000517148 110 ntBASIC2.85□□□□□ -1.95
HMGB1P09429 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.85□□□□□ -1.95
HMGB1P09429 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HMGB1P09429 RMST_6.1-201ENST00000611980 203 ntBASIC2.85□□□□□ -1.95
HMGB1P09429 AC098657.3-201ENST00000620434 263 ntBASIC2.85□□□□□ -1.95
HMGB1P09429 AC100810.6-201ENST00000638068 285 ntBASIC2.85□□□□□ -1.95
HMGB1P09429 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HMGB1P09429 RNU6-1215P-201ENST00000384441 102 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 SNORD116-4-201ENST00000384733 96 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 RNA5SP181-201ENST00000410246 98 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.84□□□□□ -1.95
HMGB1P09429 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.84□□□□□ -1.95
HMGB1P09429 OR2AQ1P-201ENST00000451972 200 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 RNU7-66P-201ENST00000459469 62 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 AC010531.2-201ENST00000465012 153 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 YWHAEP4-201ENST00000505390 198 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.84□□□□□ -1.95
HMGB1P09429 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.84□□□□□ -1.95
HMGB1P09429 AC026470.2-201ENST00000561492 181 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.84□□□□□ -1.95
HMGB1P09429 SNORA59B-202ENST00000578183 701 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.84□□□□□ -1.95
HMGB1P09429 MIR3162-201ENST00000581818 82 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 MIR3672-201ENST00000584290 82 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 MIR4753-201ENST00000585119 83 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.84□□□□□ -1.95
HMGB1P09429 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.84□□□□□ -1.95
HMGB1P09429 AC090617.10-201ENST00000624308 134 ntBASIC2.84□□□□□ -1.95
HMGB1P09429 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.84□□□□□ -1.95
HMGB1P09429 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.83□□□□□ -1.96
HMGB1P09429 Y_RNA.89-201ENST00000363031 102 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 RNU6-418P-201ENST00000384035 107 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 RNA5SP100-201ENST00000410903 110 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 RNA5SP59-201ENST00000410922 110 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 AC009310.1-201ENST00000414414 451 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HMGB1P09429 MTND1P11-201ENST00000456661 876 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 RPL23AP75-201ENST00000491601 451 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 HMGB3P17-201ENST00000504195 649 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.83□□□□□ -1.96
HMGB1P09429 RNA5SP24-201ENST00000516478 95 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 AC022254.1-201ENST00000567857 235 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 AC103810.6-201ENST00000606708 136 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 AC019193.3-201ENST00000609144 554 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 TCL6_2.1-201ENST00000615162 119 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 AC009033.1-201ENST00000624279 431 ntBASIC2.83□□□□□ -1.96
HMGB1P09429 MIR21-201ENST00000362134 72 ntBASIC2.82□□□□□ -1.96
HMGB1P09429 Y_RNA.295-201ENST00000364918 102 ntBASIC2.82□□□□□ -1.96
HMGB1P09429 MIR517A-201ENST00000385001 87 ntBASIC2.82□□□□□ -1.96
HMGB1P09429 MIR300-201ENST00000401138 83 ntBASIC2.82□□□□□ -1.96
HMGB1P09429 RPS26P42-201ENST00000413485 326 ntBASIC2.82□□□□□ -1.96
HMGB1P09429 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.82□□□□□ -1.96
HMGB1P09429 HMGB1P18-201ENST00000438801 619 ntBASIC2.82□□□□□ -1.96
HMGB1P09429 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.82□□□□□ -1.96
HMGB1P09429 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.82□□□□□ -1.96
HMGB1P09429 AC090255.1-201ENST00000495779 349 ntBASIC2.82□□□□□ -1.96
HMGB1P09429 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.82□□□□□ -1.96
HMGB1P09429 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.82□□□□□ -1.96
HMGB1P09429 AC026436.1-201ENST00000510537 270 ntBASIC2.82□□□□□ -1.96
HMGB1P09429 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.82□□□□□ -1.96
HMGB1P09429 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.82□□□□□ -1.96
HMGB1P09429 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.82□□□□□ -1.96
HMGB1P09429 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.82□□□□□ -1.96
HMGB1P09429 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.82□□□□□ -1.96
HMGB1P09429 CTSLP2-204ENST00000629029 392 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms