Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC004941.2-201ENST00000427009 228 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC0.59□□□□□ -2.31
SDCBPO00560 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC0.59□□□□□ -2.31
SDCBPO00560 AC007395.1-201ENST00000451333 677 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 C1DP4-201ENST00000455429 424 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC0.59□□□□□ -2.31
SDCBPO00560 RAP1BP2-201ENST00000478270 544 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.59□□□□□ -2.31
SDCBPO00560 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
SDCBPO00560 DEFB131C-201ENST00000528817 165 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.59□□□□□ -2.31
SDCBPO00560 AC023050.3-201ENST00000541142 333 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 EIF4A1P12-201ENST00000551910 141 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.59□□□□□ -2.31
SDCBPO00560 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC0.59□□□□□ -2.31
SDCBPO00560 TPRKBP2-201ENST00000565969 475 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 MIR4509-3-201ENST00000578671 94 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 MIR3923-201ENST00000579521 83 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 MIR4509-2-201ENST00000583920 94 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 MIR4999-201ENST00000585029 91 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 AL031281.1-201ENST00000604049 488 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 Z98751.3-201ENST00000604447 521 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 AC064872.1-201ENST00000604823 1072 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 AC138749.5-201ENST00000611461 208 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 AC040896.1-201ENST00000613819 479 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 AC116165.2-201ENST00000616705 206 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 MIR4509-1-201ENST00000618224 94 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 MIR6835-201ENST00000621552 64 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 MIR338-201ENST00000636369 67 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 RNU6-545P-201ENST00000362681 104 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 RNU6-179P-201ENST00000363350 107 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 RNU6-715P-201ENST00000365204 103 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 RNA5SP259-201ENST00000365541 109 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 RPS29P13-201ENST00000402041 169 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 AC010099.3-201ENST00000423896 409 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 AC078809.1-201ENST00000427601 140 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 AL133396.1-201ENST00000432048 687 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.58□□□□□ -2.32
SDCBPO00560 AL606662.1-201ENST00000445763 553 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 AC117454.1-201ENST00000491120 168 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.58□□□□□ -2.32
SDCBPO00560 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.58□□□□□ -2.32
SDCBPO00560 AC011406.1-201ENST00000512440 370 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC0.58□□□□□ -2.32
SDCBPO00560 AC109446.2-201ENST00000567872 497 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.58□□□□□ -2.32
SDCBPO00560 MIR4661-201ENST00000582720 75 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 AP000811.1-201ENST00000603803 651 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 AC009994.1-201ENST00000606889 253 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.58□□□□□ -2.32
SDCBPO00560 AL445984.1-201ENST00000637834 659 ntBASIC0.58□□□□□ -2.32
SDCBPO00560 AC018630.2-201ENST00000534866 2403 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AC008163.1-202ENST00000636004 2889 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 RNU6-534P-201ENST00000364877 106 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 RNU6-169P-201ENST00000365336 107 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 RNU6-550P-201ENST00000391057 101 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AC114482.1-201ENST00000418010 247 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AL117339.3-201ENST00000418733 162 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.57□□□□□ -2.32
SDCBPO00560 PIGFP2-201ENST00000421400 651 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AL606490.4-201ENST00000423117 127 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC0.57□□□□□ -2.32
SDCBPO00560 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.57□□□□□ -2.32
SDCBPO00560 AL365184.2-201ENST00000431139 435 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 HSFY7P-201ENST00000432672 318 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 HSFY8P-201ENST00000437934 318 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.57□□□□□ -2.32
SDCBPO00560 MTCYBP1-201ENST00000454315 1119 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 RPL31P3-201ENST00000458430 332 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 Y_RNA.638-201ENST00000459374 113 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 SNORD124-201ENST00000459577 104 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 MTCO2P6-201ENST00000463134 685 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.57□□□□□ -2.32
SDCBPO00560 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.57□□□□□ -2.32
SDCBPO00560 AC116562.3-201ENST00000506136 177 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.57□□□□□ -2.32
SDCBPO00560 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.57□□□□□ -2.32
SDCBPO00560 RN7SKP49-201ENST00000516675 260 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.57□□□□□ -2.32
SDCBPO00560 AC068587.5-201ENST00000528506 175 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.57□□□□□ -2.32
SDCBPO00560 AC090517.1-201ENST00000569307 266 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 MIR4709-201ENST00000577272 72 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AC016727.2-201ENST00000603988 621 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AL353149.1-201ENST00000610667 244 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AL021879.1-201ENST00000611756 288 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AC009509.4-201ENST00000619202 509 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 AL078595.3-201ENST00000623815 1166 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.57□□□□□ -2.32
SDCBPO00560 SNORA43.4-201ENST00000629559 138 ntBASIC0.57□□□□□ -2.32
SDCBPO00560 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.57□□□□□ -2.32
SDCBPO00560 OR4G1P-203ENST00000641984 1631 ntBASIC0.56□□□□□ -2.32
SDCBPO00560 RNU6-552P-201ENST00000362869 119 ntBASIC0.56□□□□□ -2.32
SDCBPO00560 RNU6-387P-201ENST00000411331 105 ntBASIC0.56□□□□□ -2.32
SDCBPO00560 COX6CP10-201ENST00000416832 224 ntBASIC0.56□□□□□ -2.32
SDCBPO00560 AC011233.1-201ENST00000422812 283 ntBASIC0.56□□□□□ -2.32
SDCBPO00560 USP9YP28-201ENST00000435142 589 ntBASIC0.56□□□□□ -2.32
SDCBPO00560 AL606517.2-201ENST00000442855 241 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms