Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 RNU4-77P-201ENST00000516692 156 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 AC010928.2-201ENST00000588017 287 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 AC100812.1-201ENST00000607622 580 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 AC108206.1-201ENST00000570186 4159 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 SNORA63C-201ENST00000364578 129 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.364-201ENST00000365532 101 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.405-201ENST00000383979 100 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-1083P-201ENST00000384022 107 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.451-201ENST00000384200 100 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.524-201ENST00000384564 100 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.561-201ENST00000384694 100 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 SNRPGP7-201ENST00000469016 106 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 RPL36AP48-201ENST00000485521 314 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 AIG1P1-201ENST00000503376 148 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 AC144568.1-201ENST00000520139 137 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 MIR3136-201ENST00000583498 78 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 RPL23AP78-201ENST00000599928 470 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 AL359198.2-201ENST00000611836 194 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 RMST_6.1-201ENST00000611980 203 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 AC087588.2-201ENST00000617667 426 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 AC137590.2-201ENST00000619709 240 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 AL606534.2-204ENST00000635008 178 ntBASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
PCDHA1Q9Y5I3 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
PCDHA1Q9Y5I3 AL359854.1-201ENST00000614203 1594 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 MIR449A-201ENST00000362113 91 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 Y_RNA.39-201ENST00000362620 98 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 DYNLT3P1-201ENST00000378574 347 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 MIR190B-201ENST00000401119 79 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 AC092423.1-201ENST00000430165 186 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 Z82188.1-201ENST00000436709 154 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 AC009296.1-201ENST00000443146 155 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 AF186996.7-201ENST00000492781 209 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 RPL22P13-201ENST00000493291 347 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 MRPS36P2-201ENST00000512569 299 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 AC008739.2-201ENST00000597006 317 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 AL360085.1-201ENST00000604713 532 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 AL138825.1-201ENST00000618587 192 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 AC138305.3-201ENST00000624988 240 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 MAPK10-266ENST00000641066 6555 ntBASIC3.08□□□□□ -1.92
PCDHA1Q9Y5I3 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 RNU4-42P-201ENST00000364738 142 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-17P-201ENST00000384245 107 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-18P-201ENST00000384527 107 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 AC097463.2-201ENST00000421074 142 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 AIMP1P2-201ENST00000425294 312 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 MTCO3P29-201ENST00000432119 779 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 AL160004.2-201ENST00000432935 350 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 AC244505.4-201ENST00000434905 287 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 SSXP5-201ENST00000443473 287 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 AC087477.1-201ENST00000465747 340 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 AC096725.1-201ENST00000514266 313 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 RNU5F-2P-201ENST00000516066 82 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 SCARNA17.1-201ENST00000516211 143 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 SCARNA17.2-201ENST00000516334 143 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 RNU6-567P-201ENST00000516746 107 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 Y_RNA.706-201ENST00000516933 99 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 AC116312.1-201ENST00000606841 314 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 MIR1244-1-201ENST00000612829 85 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 SCARNA17.4-201ENST00000614296 143 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 MIR1244-3-201ENST00000635744 85 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 MIR4272-201ENST00000635924 64 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 MIR1244-2-201ENST00000636449 85 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 MIR1244-4-202ENST00000636813 85 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 AC005592.1-201ENST00000566527 1640 ntBASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.07□□□□□ -1.92
PCDHA1Q9Y5I3 Y_RNA.40-201ENST00000362645 93 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 RNU1-57P-201ENST00000384491 166 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 MIR186-201ENST00000384988 86 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AL590135.1-201ENST00000422215 156 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AC012306.1-201ENST00000423267 114 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 AC019205.3-201ENST00000424573 156 ntBASIC3.06□□□□□ -1.92
PCDHA1Q9Y5I3 Z98742.2-201ENST00000431564 187 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 135.1 ms