Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC009994.1-201ENST00000606889 253 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.83□□□□□ -2.12
FOXA2Q9Y261 AC046143.2-201ENST00000609789 160 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 AL590240.4-201ENST00000616908 390 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 AC091932.3-201ENST00000624223 323 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 ZNF720P1-201ENST00000562403 1939 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.83□□□□□ -2.12
FOXA2Q9Y261 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
FOXA2Q9Y261 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
FOXA2Q9Y261 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
FOXA2Q9Y261 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.82□□□□□ -2.12
FOXA2Q9Y261 SNORD113-7-201ENST00000363762 77 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 RNA5SP493-201ENST00000364115 91 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
FOXA2Q9Y261 SNORA32.2-201ENST00000384049 122 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 RNU6-968P-201ENST00000384076 107 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 SNORA8-201ENST00000384574 139 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 MIR181A1-201ENST00000385026 110 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
FOXA2Q9Y261 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
FOXA2Q9Y261 RNA5SP494-201ENST00000410653 129 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 RNA5SP501-201ENST00000410990 112 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 AL030996.1-201ENST00000411430 235 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 AC123900.1-201ENST00000420390 96 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 SNRPEP8-201ENST00000442866 260 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 AL035666.1-201ENST00000446195 348 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 AC104435.1-201ENST00000483483 166 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 RPS23P5-201ENST00000495419 428 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA2Q9Y261 Y_RNA.665-201ENST00000516177 98 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 RNU6-1098P-201ENST00000516772 96 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA2Q9Y261 ZNF519P2-201ENST00000557032 169 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 ANP32BP3-201ENST00000559213 706 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA2Q9Y261 AL096840.1-201ENST00000603287 93 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 AL160394.1-201ENST00000624765 724 ntBASIC1.82□□□□□ -2.12
FOXA2Q9Y261 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.82□□□□□ -2.12
FOXA2Q9Y261 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
FOXA2Q9Y261 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
FOXA2Q9Y261 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.81□□□□□ -2.12
FOXA2Q9Y261 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXA2Q9Y261 Y_RNA.38-201ENST00000362617 102 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 RNU6-1252P-201ENST00000363054 104 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 RNY3P3-201ENST00000363816 102 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 Y_RNA.318-201ENST00000365131 97 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 RNU6-128P-201ENST00000383976 107 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 SNORA29-201ENST00000384183 140 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 SNORA67.4-201ENST00000384688 142 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 Y_RNA.615-201ENST00000410769 117 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXA2Q9Y261 RNA5SP281-201ENST00000516504 135 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 AC109635.3-201ENST00000529536 185 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 AC093783.1-201ENST00000612976 329 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 FAM157A-202ENST00000615155 405 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 AC009831.4-201ENST00000620744 325 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.81□□□□□ -2.12
FOXA2Q9Y261 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXA2Q9Y261 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXA2Q9Y261 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
FOXA2Q9Y261 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
FOXA2Q9Y261 RNA5SP289-201ENST00000362332 137 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 RNU6-451P-201ENST00000362921 107 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 RNU6-254P-201ENST00000363377 107 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 RNU6-1090P-201ENST00000364065 94 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 SNORD114-6-201ENST00000364393 72 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 Y_RNA.402-201ENST00000383972 102 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 RNU4-53P-201ENST00000410828 140 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 RNA5SP508-201ENST00000411327 119 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 EIF4EP2-201ENST00000422816 654 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 AC018634.1-201ENST00000437554 401 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.8□□□□□ -2.12
FOXA2Q9Y261 AC007547.1-201ENST00000462177 490 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA2Q9Y261 AC096745.1-201ENST00000509945 370 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA2Q9Y261 MTND1P35-201ENST00000526739 508 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
FOXA2Q9Y261 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA2Q9Y261 MIR4513-201ENST00000581077 86 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.8□□□□□ -2.12
FOXA2Q9Y261 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.8□□□□□ -2.12
FOXA2Q9Y261 MIR8076-201ENST00000611401 83 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.8□□□□□ -2.12
FOXA2Q9Y261 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
FOXA2Q9Y261 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
FOXA2Q9Y261 CBX3P1-201ENST00000325243 554 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 Y_RNA.9-201ENST00000362354 101 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 RNU4-40P-201ENST00000364351 143 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 SNORD31B-201ENST00000364977 69 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 RNA5SP37-201ENST00000365420 130 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXA2Q9Y261 RNU6-1286P-201ENST00000383871 107 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 RNU6-790P-201ENST00000384479 105 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 Y_RNA.530-201ENST00000384587 101 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
FOXA2Q9Y261 AL135786.1-201ENST00000415892 214 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 AC139712.2-201ENST00000424302 339 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms