Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 AC008250.2-201ENST00000615261 205 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 SNORA43.4-201ENST00000629559 138 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 MIR449A-201ENST00000362113 91 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 RNU1-22P-201ENST00000363334 158 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 SNORA33-201ENST00000363664 130 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 RNU6-74P-201ENST00000384235 107 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 MIR208B-201ENST00000401172 77 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 COX6CP10-201ENST00000416832 224 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 HSFY7P-201ENST00000432672 318 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 HSFY8P-201ENST00000437934 318 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 AC069257.2-201ENST00000441819 155 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 C1DP4-201ENST00000455429 424 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 RPS23P4-201ENST00000487908 423 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 RNA5SP503-201ENST00000517047 117 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 SNORA25.17-201ENST00000517184 124 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 DEFB131C-201ENST00000528817 165 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 MIR4709-201ENST00000577272 72 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 AC002044.1-201ENST00000606707 158 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 AC040896.1-201ENST00000613819 479 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 AC005520.5-201ENST00000613926 164 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 AC027335.2-201ENST00000624030 375 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 MIR338-201ENST00000636369 67 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 AC068647.2-201ENST00000637380 353 ntBASIC0.94□□□□□ -2.26
VCX3AQ9NNX9 SNORA18.2-201ENST00000383865 132 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 SNORA25-201ENST00000384384 134 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 Y_RNA.598-201ENST00000410480 95 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 RNU6-195P-201ENST00000411352 109 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AL596276.1-201ENST00000434465 418 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AC002486.1-201ENST00000435098 391 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 RPS26P45-201ENST00000471748 340 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AC067942.3-201ENST00000512025 362 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 LRRC34P2-201ENST00000514850 553 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 SNORD116-28-201ENST00000516123 91 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 RNU6-410P-201ENST00000517006 107 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 TMF1P1-201ENST00000576058 373 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 NIFKP6-201ENST00000598115 845 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AP001836.1-201ENST00000604675 523 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AC064872.1-201ENST00000604823 1072 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 BX284668.6-201ENST00000606899 438 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AL353149.1-201ENST00000610667 244 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 AC022418.1-201ENST00000624118 445 ntBASIC0.93□□□□□ -2.26
VCX3AQ9NNX9 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 RNU1-124P-201ENST00000363861 145 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 RNA5SP259-201ENST00000365541 109 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 RNU6-968P-201ENST00000384076 107 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 MIR454-201ENST00000390180 115 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 PRPS1P1-201ENST00000445305 876 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 MTND2P14-201ENST00000482139 351 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 AC008628.2-201ENST00000502605 298 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 FABP5P5-201ENST00000515537 406 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 MIR4742-201ENST00000581069 85 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 MIR548AB-201ENST00000584917 84 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 AL022161.1-201ENST00000604390 213 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 RPL17P51-201ENST00000605218 238 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 AL022345.2-201ENST00000606307 135 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 BX322639.1-202ENST00000423987 2213 ntBASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
VCX3AQ9NNX9 RNY4P34-201ENST00000364779 95 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 RNU6-1029P-201ENST00000384109 107 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 RNU6-393P-201ENST00000384475 107 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 MIR1-2-201ENST00000384961 85 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 SNORA16.2-201ENST00000390991 127 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 AC012306.1-201ENST00000423267 114 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 AL593851.1-201ENST00000426171 157 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 HSFY5P-201ENST00000453726 309 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 RPS29P15-201ENST00000458329 171 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 TRBV12-1-201ENST00000479785 344 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 AC079382.1-201ENST00000493346 557 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 RNU2-69P-201ENST00000516061 100 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 SNORD27.1-201ENST00000516319 72 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 RNU6-567P-201ENST00000516746 107 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 MRPS36P3-201ENST00000519284 130 ntBASIC0.91□□□□□ -2.26
VCX3AQ9NNX9 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms