Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.2□□□□□ -2.06
CHMP1AQ9HD42 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
CHMP1AQ9HD42 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
CHMP1AQ9HD42 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.2□□□□□ -2.06
CHMP1AQ9HD42 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 RNU6-743P-201ENST00000364151 106 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 RNU6-593P-201ENST00000364716 112 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 RNU6-26P-201ENST00000383985 107 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 Y_RNA.474-201ENST00000384341 102 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 Y_RNA.482-201ENST00000384377 111 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 MIR487A-201ENST00000385009 80 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 RNU6-1050P-201ENST00000410388 107 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 RN7SKP27-201ENST00000410684 333 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 RNU2-41P-201ENST00000410991 178 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 RPS26P42-201ENST00000413485 326 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 IPO7P1-201ENST00000442031 636 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 AL139109.1-201ENST00000455491 297 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 AC107032.1-201ENST00000485945 480 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 AC105029.1-201ENST00000520250 669 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 MIR4273-201ENST00000582824 84 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 MIR4325-201ENST00000583049 90 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 AC092794.2-201ENST00000620933 563 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 SCARNA4-201ENST00000629045 128 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 MIR203B-201ENST00000636080 86 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 MTND4P12-201ENST00000498999 1377 ntBASIC2.19□□□□□ -2.06
CHMP1AQ9HD42 Y_RNA.48-201ENST00000362710 103 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 Y_RNA.142-201ENST00000363491 102 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 RNU1-112P-201ENST00000364401 164 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 U8.10-201ENST00000384260 133 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 AC243428.1-201ENST00000421099 264 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 AC011816.1-201ENST00000441346 546 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 MTND4P18-201ENST00000447010 465 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 OR2AQ1P-201ENST00000451972 200 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 PRELID3BP1-201ENST00000457142 540 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 MIR3126-201ENST00000577443 74 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 SNORD53-201ENST00000579969 78 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 AC016727.2-201ENST00000603988 621 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 AC016727.1-205ENST00000605437 569 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 AP000654.2-201ENST00000605633 586 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 AL359757.2-201ENST00000624309 274 ntBASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CHMP1AQ9HD42 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 RNU6-234P-201ENST00000365229 104 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 MIR549A-201ENST00000385268 96 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 MIR1262-201ENST00000408276 93 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 RPL7P42-201ENST00000481005 679 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 SLC25A15P5-201ENST00000508033 253 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 RNU6-507P-201ENST00000516045 100 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 RNU6-875P-201ENST00000516488 106 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 DEFB131C-201ENST00000528817 165 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 CBX3P8-201ENST00000532412 525 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 AC090517.1-201ENST00000569307 266 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 AC243960.4-201ENST00000600532 288 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 SNRPGP17-201ENST00000603780 214 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 MIR92B-201ENST00000607575 96 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 AC009229.3-201ENST00000608056 282 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 AC099654.5-201ENST00000636479 350 ntBASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CHMP1AQ9HD42 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 RNU4-9P-201ENST00000364951 139 ntBASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 Y_RNA.404-201ENST00000383978 102 ntBASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 MTATP6P23-201ENST00000440153 476 ntBASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 AC132942.1-201ENST00000486753 483 ntBASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 ATP5EP1-201ENST00000510257 156 ntBASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 AC107222.1-201ENST00000510899 637 ntBASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 RNU6-991P-201ENST00000516168 107 ntBASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 RNU7-193P-201ENST00000516723 65 ntBASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 RNU6-1098P-201ENST00000516772 96 ntBASIC2.16□□□□□ -2.06
CHMP1AQ9HD42 RNA5SP137-201ENST00000516833 135 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms