Protein–RNA interactions for Protein: Q9H321

VCX3B, Variable charge X-linked protein 3B, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3BQ9H321 MTND1P8-201ENST00000571424 950 ntBASIC0.71□□□□□ -2.3
VCX3BQ9H321 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.71□□□□□ -2.3
VCX3BQ9H321 MIR3923-201ENST00000579521 83 ntBASIC0.71□□□□□ -2.3
VCX3BQ9H321 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.71□□□□□ -2.3
VCX3BQ9H321 CTHRC1P1-201ENST00000605383 469 ntBASIC0.71□□□□□ -2.3
VCX3BQ9H321 AL365434.2-201ENST00000607979 234 ntBASIC0.71□□□□□ -2.3
VCX3BQ9H321 PCGEM1.1-201ENST00000613431 131 ntBASIC0.71□□□□□ -2.3
VCX3BQ9H321 AC027807.2-201ENST00000616099 408 ntBASIC0.71□□□□□ -2.3
VCX3BQ9H321 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.71□□□□□ -2.3
VCX3BQ9H321 MTND5P17-201ENST00000418405 1603 ntBASIC0.71□□□□□ -2.3
VCX3BQ9H321 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.7□□□□□ -2.3
VCX3BQ9H321 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC0.7□□□□□ -2.3
VCX3BQ9H321 RNU6-169P-201ENST00000365336 107 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 RPS29P13-201ENST00000402041 169 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 RNU2-8P-201ENST00000410727 190 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 RNU6-733P-201ENST00000410759 104 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AC106883.1-201ENST00000418805 562 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AC078809.1-201ENST00000427601 140 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 MTCO3P29-201ENST00000432119 779 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC0.7□□□□□ -2.3
VCX3BQ9H321 AC069257.2-201ENST00000441819 155 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 TAF9P1-201ENST00000445421 515 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AL513124.1-201ENST00000450410 614 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AL133217.1-201ENST00000450980 425 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AC007395.1-201ENST00000451333 677 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 TAF9P2-201ENST00000454958 515 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 snoU13.27-201ENST00000459278 104 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 snoU13.15-201ENST00000459407 104 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.7□□□□□ -2.3
VCX3BQ9H321 AC119751.5-201ENST00000514077 770 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 RNU6-322P-201ENST00000516010 103 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 RNU6-197P-201ENST00000516680 100 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 RNU6-856P-201ENST00000516959 98 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AC090572.1-201ENST00000519251 160 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AC022878.1-201ENST00000530684 149 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AC005771.1-201ENST00000585581 349 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC0.7□□□□□ -2.3
VCX3BQ9H321 BNIP3P8-201ENST00000597863 560 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AL356157.2-201ENST00000605122 111 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AL353149.1-201ENST00000610667 244 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AC091304.9-201ENST00000612091 226 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 MIR7844-201ENST00000616161 122 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AL450472.1-202ENST00000637286 180 ntBASIC0.7□□□□□ -2.3
VCX3BQ9H321 AC106754.1-201ENST00000562632 1513 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
VCX3BQ9H321 AL356776.1-201ENST00000406574 447 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.69□□□□□ -2.3
VCX3BQ9H321 AL354692.1-201ENST00000423044 315 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 AL133396.1-201ENST00000432048 687 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 AC104850.1-201ENST00000435940 476 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 EPS15P1-201ENST00000448836 336 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 MTCYBP1-201ENST00000454315 1119 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 MTCO2P6-201ENST00000463134 685 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.69□□□□□ -2.3
VCX3BQ9H321 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.69□□□□□ -2.3
VCX3BQ9H321 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.69□□□□□ -2.3
VCX3BQ9H321 AC091874.1-201ENST00000511402 339 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 RNU6-1178P-201ENST00000516674 107 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.69□□□□□ -2.3
VCX3BQ9H321 EIF4A1P12-201ENST00000551910 141 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 AC008751.2-201ENST00000597885 980 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 Z98751.3-201ENST00000604447 521 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 AL391834.2-201ENST00000609982 546 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 MIR6857-201ENST00000613267 93 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 AC011155.2-201ENST00000623202 216 ntBASIC0.69□□□□□ -2.3
VCX3BQ9H321 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC0.69□□□□□ -2.3
VCX3BQ9H321 RNU6-552P-201ENST00000362869 119 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 SNORA4.2-201ENST00000365313 147 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
VCX3BQ9H321 SNORA36A-201ENST00000384221 132 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 RNU6-378P-201ENST00000384324 107 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 RNU6-1026P-201ENST00000384465 108 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 MIR608-201ENST00000384820 100 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC0.68□□□□□ -2.3
VCX3BQ9H321 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.68□□□□□ -2.3
VCX3BQ9H321 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.68□□□□□ -2.3
VCX3BQ9H321 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.68□□□□□ -2.3
VCX3BQ9H321 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC0.68□□□□□ -2.3
VCX3BQ9H321 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.68□□□□□ -2.3
VCX3BQ9H321 AL162395.1-201ENST00000457882 422 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 AL163973.1-201ENST00000484753 577 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 TRBVA-201ENST00000498804 316 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 AC016632.1-201ENST00000503994 196 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC0.68□□□□□ -2.3
VCX3BQ9H321 RNU6-311P-201ENST00000516224 102 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 RNU6-1041P-201ENST00000516254 102 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 RNU6-410P-201ENST00000517006 107 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 CBX3P8-201ENST00000532412 525 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.68□□□□□ -2.3
VCX3BQ9H321 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.68□□□□□ -2.3
VCX3BQ9H321 CYP4A27P-201ENST00000567218 190 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 RPL17P51-201ENST00000605218 238 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 AC009994.1-201ENST00000606889 253 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC0.68□□□□□ -2.3
VCX3BQ9H321 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.68□□□□□ -2.3
VCX3BQ9H321 RNU6-1287P-201ENST00000362914 107 ntBASIC0.67□□□□□ -2.3
VCX3BQ9H321 SNORA33-201ENST00000363664 130 ntBASIC0.67□□□□□ -2.3
VCX3BQ9H321 RNU5F-7P-201ENST00000363696 115 ntBASIC0.67□□□□□ -2.3
VCX3BQ9H321 RNU6-1060P-201ENST00000384664 107 ntBASIC0.67□□□□□ -2.3
VCX3BQ9H321 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms