Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.51□□□□□ -2.17
CDX2Q99626 FARSBP1-201ENST00000435808 1778 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 MTND5P17-201ENST00000418405 1603 ntBASIC1.51□□□□□ -2.17
CDX2Q99626 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.5□□□□□ -2.17
CDX2Q99626 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.5□□□□□ -2.17
CDX2Q99626 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.5□□□□□ -2.17
CDX2Q99626 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
CDX2Q99626 RNU4-91P-201ENST00000364778 135 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 SNORD115-7-201ENST00000365306 82 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 RNU6-1283P-201ENST00000365314 105 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
CDX2Q99626 SNORD116-20-201ENST00000384529 92 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 RNU6-1179P-201ENST00000384667 107 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 Y_RNA.576-201ENST00000384781 102 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 Y_RNA.582-201ENST00000391023 95 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 MIR1304-201ENST00000408243 91 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 RNU6-607P-201ENST00000411283 108 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AC074117.2-201ENST00000417130 397 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.5□□□□□ -2.17
CDX2Q99626 MTCO2P11-201ENST00000431069 680 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.5□□□□□ -2.17
CDX2Q99626 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AC073614.1-201ENST00000438690 650 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AL136380.1-201ENST00000447970 162 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.5□□□□□ -2.17
CDX2Q99626 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AC069439.1-201ENST00000494739 167 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AC107401.1-201ENST00000503426 685 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AC116562.3-201ENST00000506136 177 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 RNU2-53P-201ENST00000516257 147 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 Vault.3-201ENST00000516676 95 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AC087854.1-201ENST00000519706 414 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AC068587.5-201ENST00000528506 175 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 BNIP3P6-201ENST00000549284 499 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AC087883.1-201ENST00000551882 391 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.5□□□□□ -2.17
CDX2Q99626 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.5□□□□□ -2.17
CDX2Q99626 AC068944.2-201ENST00000610373 403 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AP001506.1-201ENST00000615444 211 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 uc_338.15-201ENST00000615470 191 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AC099654.12-201ENST00000639868 649 ntBASIC1.5□□□□□ -2.17
CDX2Q99626 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.5□□□□□ -2.17
CDX2Q99626 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
CDX2Q99626 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
CDX2Q99626 RNU6-858P-201ENST00000362436 107 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 RNU6-181P-201ENST00000363225 107 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 RNU6-179P-201ENST00000363350 107 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 Y_RNA.251-201ENST00000364551 99 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 Y_RNA.256-201ENST00000364594 104 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 RNU6-1274P-201ENST00000384557 107 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 MIR561-201ENST00000385216 97 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 SNORD115-47-201ENST00000391226 86 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 RNA5SP390-201ENST00000410191 113 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 RNA5SP450-201ENST00000411206 102 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 MTCO2P19-201ENST00000427513 598 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 AC092989.1-201ENST00000481235 277 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC1.49□□□□□ -2.17
CDX2Q99626 AC108078.1-201ENST00000508073 725 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 SNORA4.4-201ENST00000515921 135 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 RNU6-445P-201ENST00000516949 107 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 RN7SKP256-201ENST00000517201 314 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.49□□□□□ -2.17
CDX2Q99626 AC107953.1-201ENST00000522216 297 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.49□□□□□ -2.17
CDX2Q99626 AC018630.3-201ENST00000542637 96 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.49□□□□□ -2.17
CDX2Q99626 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 AC090517.2-201ENST00000614966 680 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 U6.42-201ENST00000618440 107 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 AL158209.2-201ENST00000619266 216 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.49□□□□□ -2.17
CDX2Q99626 AC011155.2-201ENST00000623202 216 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 SEPT14P19-203ENST00000633205 211 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 MIR6863-201ENST00000636112 90 ntBASIC1.49□□□□□ -2.17
CDX2Q99626 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
CDX2Q99626 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
CDX2Q99626 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
CDX2Q99626 RNU6-78P-201ENST00000362897 107 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 Y_RNA.303-201ENST00000364998 94 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 RNU6-108P-201ENST00000365558 107 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 RNU6-1080P-201ENST00000383982 107 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 Y_RNA.433-201ENST00000384089 102 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 MIR1-2-201ENST00000384961 85 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
CDX2Q99626 CBX3P9-201ENST00000402326 552 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 RPL21P90-201ENST00000415692 466 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 USP9YP18-201ENST00000425912 695 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 AL669831.1-202ENST00000428504 417 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 GTF2IP13-201ENST00000438487 386 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 AC007969.2-201ENST00000441891 191 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.48□□□□□ -2.17
CDX2Q99626 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.48□□□□□ -2.17
CDX2Q99626 C1DP4-201ENST00000455429 424 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.48□□□□□ -2.17
CDX2Q99626 MTND3P25-201ENST00000509243 135 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 RN7SKP298-201ENST00000515950 94 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 RNU6-506P-201ENST00000516553 94 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 RN7SKP49-201ENST00000516675 260 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 MTCO2P4-201ENST00000517968 247 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms