Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL031281.1-201ENST00000604049 488 ntBASIC-1.21□□□□□ -2.6
VPS13AQ96RL7 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC-1.21□□□□□ -2.6
VPS13AQ96RL7 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC-1.21□□□□□ -2.6
VPS13AQ96RL7 AC116165.2-201ENST00000616705 206 ntBASIC-1.21□□□□□ -2.6
VPS13AQ96RL7 RNU6-796P-201ENST00000391086 107 ntBASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 DEFB130D-201ENST00000426866 237 ntBASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 snoU13.7-201ENST00000459220 104 ntBASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 AC140658.3-201ENST00000567603 271 ntBASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 BNIP3P27-201ENST00000599991 412 ntBASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 RNU6-428P-201ENST00000362942 107 ntBASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 FCF1P4-201ENST00000448326 183 ntBASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 AL500527.2-201ENST00000454105 95 ntBASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 MTCO2P18-201ENST00000457151 658 ntBASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 RNU4-49P-201ENST00000516080 140 ntBASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC-1.22□□□□□ -2.6
VPS13AQ96RL7 AL160275.3-201ENST00000423876 471 ntBASIC-1.22□□□□□ -2.61
VPS13AQ96RL7 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC-1.22□□□□□ -2.61
VPS13AQ96RL7 RNU6-420P-201ENST00000458780 107 ntBASIC-1.22□□□□□ -2.61
VPS13AQ96RL7 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC-1.22□□□□□ -2.61
VPS13AQ96RL7 AC026421.1-201ENST00000519101 163 ntBASIC-1.22□□□□□ -2.61
VPS13AQ96RL7 AC093838.1-201ENST00000613014 469 ntBASIC-1.22□□□□□ -2.61
VPS13AQ96RL7 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC-1.23□□□□□ -2.61
VPS13AQ96RL7 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-1.23□□□□□ -2.61
VPS13AQ96RL7 AC069304.3-201ENST00000603938 1084 ntBASIC-1.23□□□□□ -2.61
VPS13AQ96RL7 MIR5739-201ENST00000619803 80 ntBASIC-1.23□□□□□ -2.61
VPS13AQ96RL7 uc_338.16-201ENST00000621804 95 ntBASIC-1.23□□□□□ -2.61
VPS13AQ96RL7 MIR499B-201ENST00000636498 73 ntBASIC-1.23□□□□□ -2.61
VPS13AQ96RL7 RNA5SP163-201ENST00000410304 99 ntBASIC-1.23□□□□□ -2.61
VPS13AQ96RL7 Y_RNA.653-201ENST00000459091 95 ntBASIC-1.23□□□□□ -2.61
VPS13AQ96RL7 Y_RNA.231-201ENST00000364358 102 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 AC083799.1-201ENST00000366451 910 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 SNORA80D-201ENST00000384488 135 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 AL133264.1-201ENST00000407157 562 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 RNU6-233P-201ENST00000410845 141 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 RNU6-848P-201ENST00000515948 107 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 RNU6-617P-201ENST00000516147 107 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 RNU6-473P-201ENST00000516164 107 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 RNU6-1049P-201ENST00000516414 107 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 AL132657.2-201ENST00000564417 358 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 AC096586.2-201ENST00000610260 441 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 AC130324.3-201ENST00000614165 542 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 MIR4496-201ENST00000635896 61 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 Y_RNA.505-201ENST00000384489 102 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 RNU6-540P-201ENST00000384622 101 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 UBE2Q2P8-201ENST00000560644 102 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 MIR4765-201ENST00000585007 77 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 AC068790.2-201ENST00000602601 557 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 AC015726.2-201ENST00000620112 122 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 MIR454-201ENST00000390180 115 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 CALM2P2-201ENST00000428512 440 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 MTATP6P22-201ENST00000507369 598 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 PTP4A1P4-201ENST00000512479 322 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 AC136475.10-201ENST00000620253 385 ntBASIC-1.24□□□□□ -2.61
VPS13AQ96RL7 Y_RNA.430-201ENST00000384081 110 ntBASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 RNU6-679P-201ENST00000391003 106 ntBASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 PNPLA4P1-201ENST00000458328 305 ntBASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 AC022616.2-201ENST00000523185 300 ntBASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 AC104695.3-201ENST00000604052 296 ntBASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 AC005021.1-201ENST00000608730 355 ntBASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 RNU6-1083P-201ENST00000384022 107 ntBASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 RNU6-811P-201ENST00000384069 107 ntBASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 SNORD105-201ENST00000386910 85 ntBASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 SCARNA3-201ENST00000517097 143 ntBASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 AF129408.1-201ENST00000608767 431 ntBASIC-1.25□□□□□ -2.61
VPS13AQ96RL7 RNU6-225P-201ENST00000384613 103 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 RNA5SP111-201ENST00000411386 101 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 MTND2P21-201ENST00000436242 1042 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 BBIP1P1-201ENST00000602999 279 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 RNU5E-1-201ENST00000362477 120 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 PTGES3P1-201ENST00000439531 483 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 AC091152.3-201ENST00000604227 325 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 RNU5D-1-201ENST00000363299 116 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 SNORD116-13-201ENST00000384408 92 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 RNU6-180P-201ENST00000516697 61 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 DEFB130C-202ENST00000530001 230 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 AC073968.1-201ENST00000618594 637 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 MIR6514-201ENST00000622549 70 ntBASIC-1.26□□□□□ -2.61
VPS13AQ96RL7 MIR103A2-201ENST00000362154 78 ntBASIC-1.27□□□□□ -2.61
VPS13AQ96RL7 RNU6-161P-201ENST00000363051 106 ntBASIC-1.27□□□□□ -2.61
VPS13AQ96RL7 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC-1.27□□□□□ -2.61
VPS13AQ96RL7 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC-1.27□□□□□ -2.61
VPS13AQ96RL7 AC012308.1-201ENST00000451232 178 ntBASIC-1.27□□□□□ -2.61
VPS13AQ96RL7 SCARNA18B-201ENST00000458806 135 ntBASIC-1.27□□□□□ -2.61
VPS13AQ96RL7 AC130509.1-201ENST00000464158 433 ntBASIC-1.27□□□□□ -2.61
VPS13AQ96RL7 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC-1.27□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms