Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.7□□□□□ -2.14
VPS35Q96QK1 SNORA14.1-201ENST00000516113 141 ntBASIC1.7□□□□□ -2.14
VPS35Q96QK1 AC021231.3-201ENST00000558497 370 ntBASIC1.7□□□□□ -2.14
VPS35Q96QK1 MIR3169-201ENST00000578032 83 ntBASIC1.7□□□□□ -2.14
VPS35Q96QK1 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.7□□□□□ -2.14
VPS35Q96QK1 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.7□□□□□ -2.14
VPS35Q96QK1 MIR3611-201ENST00000584484 83 ntBASIC1.7□□□□□ -2.14
VPS35Q96QK1 Z98751.3-201ENST00000604447 521 ntBASIC1.7□□□□□ -2.14
VPS35Q96QK1 MIR7843-201ENST00000622274 79 ntBASIC1.7□□□□□ -2.14
VPS35Q96QK1 AC097520.1-201ENST00000624435 385 ntBASIC1.7□□□□□ -2.14
VPS35Q96QK1 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.7□□□□□ -2.14
VPS35Q96QK1 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
VPS35Q96QK1 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
VPS35Q96QK1 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
VPS35Q96QK1 U3.9-201ENST00000363823 204 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 SNORD48-201ENST00000364953 64 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 SNORA36A-201ENST00000384221 132 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 RNU6-1119P-201ENST00000384349 108 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 RNU6-1106P-201ENST00000390845 107 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 AL627390.1-201ENST00000396055 340 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 AC009310.1-201ENST00000414414 451 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.69□□□□□ -2.14
VPS35Q96QK1 AL591806.2-201ENST00000433122 173 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS35Q96QK1 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS35Q96QK1 RNU6-189P-201ENST00000516120 101 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.69□□□□□ -2.14
VPS35Q96QK1 HSBP1P1-201ENST00000555205 166 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 CYP4A27P-201ENST00000567218 190 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 AC104581.2-201ENST00000572227 430 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 PCGEM1.1-201ENST00000613431 131 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 AC139792.3-201ENST00000623525 224 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 SNORA43.4-201ENST00000629559 138 ntBASIC1.69□□□□□ -2.14
VPS35Q96QK1 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
VPS35Q96QK1 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
VPS35Q96QK1 LINC02555-201ENST00000563933 1951 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.68□□□□□ -2.14
VPS35Q96QK1 CBX3P1-201ENST00000325243 554 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 SNORD114-6-201ENST00000364393 72 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 RNU4-42P-201ENST00000364738 142 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 SNORD116-9-201ENST00000384000 95 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 SNORD116-3-201ENST00000384287 95 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 SNORD116-7-201ENST00000384404 95 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 SNORD116-5-201ENST00000384462 95 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 MTCO3P41-201ENST00000414801 328 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.68□□□□□ -2.14
VPS35Q96QK1 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.68□□□□□ -2.14
VPS35Q96QK1 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.68□□□□□ -2.14
VPS35Q96QK1 TPTE2P5-203ENST00000458118 728 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 MTCO3P38-201ENST00000468910 766 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.68□□□□□ -2.14
VPS35Q96QK1 AC008628.2-201ENST00000502605 298 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 ATP5EP1-201ENST00000510257 156 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 RPL39P5-202ENST00000512505 151 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 RNVU1-2-201ENST00000516326 135 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 SNORA25.15-201ENST00000516487 89 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 RNU6-567P-201ENST00000516746 107 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 RNU6-548P-201ENST00000517083 115 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.68□□□□□ -2.14
VPS35Q96QK1 CENPUP1-201ENST00000526649 1202 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 AC087441.2-201ENST00000529141 262 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.68□□□□□ -2.14
VPS35Q96QK1 AP003034.1-201ENST00000534621 422 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC1.68□□□□□ -2.14
VPS35Q96QK1 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.68□□□□□ -2.14
VPS35Q96QK1 AC104984.5-201ENST00000586878 94 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 AP001330.5-201ENST00000607176 411 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 AC017083.3-201ENST00000609955 700 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 MIR6715A-201ENST00000615929 79 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC1.68□□□□□ -2.14
VPS35Q96QK1 RNU6-378P-201ENST00000384324 107 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 MIR764-201ENST00000390811 85 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 RNU2-41P-201ENST00000410991 178 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 AL663109.1-201ENST00000411498 844 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 POLHP1-201ENST00000411806 470 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS35Q96QK1 GNAI2P1-201ENST00000541815 315 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 EIF4A1P12-201ENST00000551910 141 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS35Q96QK1 AC010620.1-201ENST00000601088 1102 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 AC092747.3-201ENST00000603769 301 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 MIR502-201ENST00000606349 86 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 AC103810.8-201ENST00000607347 118 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 RMST_6.1-201ENST00000611980 203 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 AC103705.1-201ENST00000619013 241 ntBASIC1.67□□□□□ -2.14
VPS35Q96QK1 AC233981.2-201ENST00000611524 1614 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.66□□□□□ -2.14
VPS35Q96QK1 RNU6-997P-201ENST00000384725 107 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 AC123900.1-201ENST00000420390 96 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.66□□□□□ -2.14
VPS35Q96QK1 HSPE1P21-201ENST00000438283 308 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 SNRPEP8-201ENST00000442866 260 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 HMGN2P23-201ENST00000456759 269 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 RNU1-131P-201ENST00000458943 161 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 AC130509.1-201ENST00000464158 433 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 AC083798.1-201ENST00000472671 131 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 RNA5SP401-201ENST00000515920 127 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 RNU6-1038P-201ENST00000516516 104 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 AP005597.4-201ENST00000526762 229 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms