Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 LINC02555-201ENST00000563933 1951 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 SNORA36A-201ENST00000384221 132 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 RNU4-55P-201ENST00000410731 137 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 AP000275.1-201ENST00000411943 390 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 MTCO2P3-201ENST00000442543 421 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 ATP5EP1-201ENST00000510257 156 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 AC005741.1-201ENST00000511094 432 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 AC008834.1-201ENST00000511612 175 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 SNORA14.1-201ENST00000516113 141 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 Y_RNA.688-201ENST00000516565 95 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 AC025811.1-201ENST00000604312 472 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 MIR502-201ENST00000606349 86 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 RN7SKP299-201ENST00000606679 301 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 SNORA43.4-201ENST00000629559 138 ntBASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
CCDC40Q4G0X9 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 U3.9-201ENST00000363823 204 ntBASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 RNU6-378P-201ENST00000384324 107 ntBASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 RNU6-997P-201ENST00000384725 107 ntBASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 RN7SKP101-201ENST00000411376 320 ntBASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 RPL31P3-201ENST00000458430 332 ntBASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 AC008628.2-201ENST00000502605 298 ntBASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 AC116337.1-201ENST00000509680 687 ntBASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 RNU6-295P-201ENST00000516901 104 ntBASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 AC011494.1-201ENST00000596454 237 ntBASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 MTND4P23-201ENST00000447723 1363 ntBASIC1.79□□□□□ -2.12
CCDC40Q4G0X9 CBX3P1-201ENST00000325243 554 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 AL627390.1-201ENST00000396055 340 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 RNU2-41P-201ENST00000410991 178 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 AC123900.1-201ENST00000420390 96 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 MTCO3P38-201ENST00000468910 766 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 RPL39P5-202ENST00000512505 151 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 AC021231.3-201ENST00000558497 370 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 CYP4A27P-201ENST00000567218 190 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 MIR4285-201ENST00000581001 85 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 AC017083.3-201ENST00000609955 700 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 AC139792.3-201ENST00000623525 224 ntBASIC1.78□□□□□ -2.12
CCDC40Q4G0X9 MIR340-201ENST00000362125 95 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 RNA5SP100-201ENST00000410903 110 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 RNA5SP59-201ENST00000410922 110 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 MTCO3P41-201ENST00000414801 328 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 SNRPEP8-201ENST00000442866 260 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 TPTE2P5-203ENST00000458118 728 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 RNU1-131P-201ENST00000458943 161 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 AC007547.1-201ENST00000462177 490 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 RNU6-189P-201ENST00000516120 101 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 RNU6-1038P-201ENST00000516516 104 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 RNU6-567P-201ENST00000516746 107 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 SNORA44.1-201ENST00000517031 108 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 EIF4A1P12-201ENST00000551910 141 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 MIR3611-201ENST00000584484 83 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 AC010620.1-201ENST00000601088 1102 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 AP001330.5-201ENST00000607176 411 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 RMST_6.1-201ENST00000611980 203 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 AC022513.1-201ENST00000624512 117 ntBASIC1.77□□□□□ -2.13
CCDC40Q4G0X9 SNORD116-9-201ENST00000384000 95 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 SNORD116-3-201ENST00000384287 95 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 RNU6-1119P-201ENST00000384349 108 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 SNORD116-7-201ENST00000384404 95 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 SNORD116-5-201ENST00000384462 95 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 MIR504-201ENST00000385065 83 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 RNU6-1106P-201ENST00000390845 107 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 SNORD37.1-201ENST00000390968 65 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 MIR934-201ENST00000401241 83 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 AC130509.1-201ENST00000464158 433 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 SNORA25.15-201ENST00000516487 89 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 RNU6-1098P-201ENST00000516772 96 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 CENPUP1-201ENST00000526649 1202 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 AP005597.4-201ENST00000526762 229 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 AP003034.1-201ENST00000534621 422 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 AL118558.2-201ENST00000556294 238 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 MIR3198-2-201ENST00000577868 80 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 AC010900.2-201ENST00000604508 210 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 MIR6715A-201ENST00000615929 79 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 AC103705.1-201ENST00000619013 241 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 125 ms