Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
RNF4P78317 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
RNF4P78317 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
RNF4P78317 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
RNF4P78317 Y_RNA.170-201ENST00000363746 110 ntBASIC3.55□□□□□ -1.84
RNF4P78317 SNORA18.2-201ENST00000383865 132 ntBASIC3.55□□□□□ -1.84
RNF4P78317 RNU6-211P-201ENST00000384047 107 ntBASIC3.55□□□□□ -1.84
RNF4P78317 RNU6-1310P-201ENST00000384153 107 ntBASIC3.55□□□□□ -1.84
RNF4P78317 MIR134-201ENST00000385258 73 ntBASIC3.55□□□□□ -1.84
RNF4P78317 RN7SKP156-201ENST00000410308 342 ntBASIC3.55□□□□□ -1.84
RNF4P78317 RNA5SP475-201ENST00000410568 110 ntBASIC3.55□□□□□ -1.84
RNF4P78317 AC096649.2-201ENST00000416186 393 ntBASIC3.55□□□□□ -1.84
RNF4P78317 AC009963.1-201ENST00000417265 157 ntBASIC3.55□□□□□ -1.84
RNF4P78317 BTF3P11-201ENST00000426582 477 ntBASIC3.55□□□□□ -1.84
RNF4P78317 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.55□□□□□ -1.84
RNF4P78317 AL031183.1-201ENST00000457667 207 ntBASIC3.55□□□□□ -1.84
RNF4P78317 snoU13.14-201ENST00000459372 104 ntBASIC3.55□□□□□ -1.84
RNF4P78317 RPS29P26-201ENST00000477483 171 ntBASIC3.55□□□□□ -1.84
RNF4P78317 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.55□□□□□ -1.84
RNF4P78317 RNU6-1219P-201ENST00000516143 112 ntBASIC3.55□□□□□ -1.84
RNF4P78317 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.55□□□□□ -1.84
RNF4P78317 SCARNA14-201ENST00000516903 136 ntBASIC3.55□□□□□ -1.84
RNF4P78317 AC022695.1-201ENST00000522089 237 ntBASIC3.55□□□□□ -1.84
RNF4P78317 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.55□□□□□ -1.84
RNF4P78317 AC006130.2-201ENST00000586202 326 ntBASIC3.55□□□□□ -1.84
RNF4P78317 AL391813.1-201ENST00000603098 260 ntBASIC3.55□□□□□ -1.84
RNF4P78317 AC005562.2-201ENST00000618264 111 ntBASIC3.55□□□□□ -1.84
RNF4P78317 AC006111.3-201ENST00000622137 383 ntBASIC3.55□□□□□ -1.84
RNF4P78317 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
RNF4P78317 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
RNF4P78317 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.55□□□□□ -1.84
RNF4P78317 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
RNF4P78317 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.55□□□□□ -1.84
RNF4P78317 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
RNF4P78317 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.55□□□□□ -1.84
RNF4P78317 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.54□□□□□ -1.84
RNF4P78317 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
RNF4P78317 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
RNF4P78317 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
RNF4P78317 Y_RNA.8-201ENST00000362353 102 ntBASIC3.54□□□□□ -1.84
RNF4P78317 snoU2_19.1-201ENST00000362361 80 ntBASIC3.54□□□□□ -1.84
RNF4P78317 Y_RNA.329-201ENST00000365209 107 ntBASIC3.54□□□□□ -1.84
RNF4P78317 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
RNF4P78317 SNORA57.3-201ENST00000411095 141 ntBASIC3.54□□□□□ -1.84
RNF4P78317 OOSP1P1-201ENST00000423265 274 ntBASIC3.54□□□□□ -1.84
RNF4P78317 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.54□□□□□ -1.84
RNF4P78317 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.54□□□□□ -1.84
RNF4P78317 AC004386.2-201ENST00000441858 148 ntBASIC3.54□□□□□ -1.84
RNF4P78317 AC091021.1-201ENST00000468051 388 ntBASIC3.54□□□□□ -1.84
RNF4P78317 RPL31P41-201ENST00000477967 372 ntBASIC3.54□□□□□ -1.84
RNF4P78317 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.54□□□□□ -1.84
RNF4P78317 EIF4A1P12-201ENST00000551910 141 ntBASIC3.54□□□□□ -1.84
RNF4P78317 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.54□□□□□ -1.84
RNF4P78317 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.54□□□□□ -1.84
RNF4P78317 AC087499.8-201ENST00000578406 226 ntBASIC3.54□□□□□ -1.84
RNF4P78317 MIR5006-201ENST00000583027 110 ntBASIC3.54□□□□□ -1.84
RNF4P78317 AL008718.3-201ENST00000610217 321 ntBASIC3.54□□□□□ -1.84
RNF4P78317 AC104465.1-201ENST00000611365 139 ntBASIC3.54□□□□□ -1.84
RNF4P78317 AL365265.1-201ENST00000621045 234 ntBASIC3.54□□□□□ -1.84
RNF4P78317 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
RNF4P78317 RNU6-1272P-201ENST00000362776 107 ntBASIC3.53□□□□□ -1.84
RNF4P78317 RNU6-655P-201ENST00000362858 107 ntBASIC3.53□□□□□ -1.84
RNF4P78317 RNU6-1210P-201ENST00000363775 107 ntBASIC3.53□□□□□ -1.84
RNF4P78317 U3.9-201ENST00000363823 204 ntBASIC3.53□□□□□ -1.84
RNF4P78317 RNU6-324P-201ENST00000363957 106 ntBASIC3.53□□□□□ -1.84
RNF4P78317 Y_RNA.262-201ENST00000364641 102 ntBASIC3.53□□□□□ -1.84
RNF4P78317 Y_RNA.304-201ENST00000365011 112 ntBASIC3.53□□□□□ -1.84
RNF4P78317 RNU6-1264P-201ENST00000383891 107 ntBASIC3.53□□□□□ -1.84
RNF4P78317 RNU6-804P-201ENST00000384286 107 ntBASIC3.53□□□□□ -1.84
RNF4P78317 MIR554-201ENST00000384874 96 ntBASIC3.53□□□□□ -1.84
RNF4P78317 MIR591-201ENST00000385290 95 ntBASIC3.53□□□□□ -1.84
RNF4P78317 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.53□□□□□ -1.84
RNF4P78317 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.53□□□□□ -1.84
RNF4P78317 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.53□□□□□ -1.84
RNF4P78317 SNORA31.21-201ENST00000517180 77 ntBASIC3.53□□□□□ -1.84
RNF4P78317 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.53□□□□□ -1.84
RNF4P78317 AC027176.1-201ENST00000560204 514 ntBASIC3.53□□□□□ -1.84
RNF4P78317 AC090877.1-201ENST00000561418 344 ntBASIC3.53□□□□□ -1.84
RNF4P78317 AC025281.1-201ENST00000567026 265 ntBASIC3.53□□□□□ -1.84
RNF4P78317 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.53□□□□□ -1.84
RNF4P78317 U6.106-201ENST00000636360 105 ntBASIC3.53□□□□□ -1.84
RNF4P78317 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.53□□□□□ -1.84
RNF4P78317 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
RNF4P78317 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
RNF4P78317 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
RNF4P78317 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.53□□□□□ -1.85
RNF4P78317 AC002546.1-201ENST00000588041 2504 ntBASIC3.52□□□□□ -1.85
RNF4P78317 AC010680.1-201ENST00000590024 3590 ntBASIC3.52□□□□□ -1.85
RNF4P78317 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
RNF4P78317 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
RNF4P78317 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
RNF4P78317 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
RNF4P78317 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.52□□□□□ -1.85
RNF4P78317 RNU6-454P-201ENST00000364292 107 ntBASIC3.52□□□□□ -1.85
RNF4P78317 Y_RNA.240-201ENST00000364469 95 ntBASIC3.52□□□□□ -1.85
RNF4P78317 MTCO2P33-201ENST00000402100 465 ntBASIC3.52□□□□□ -1.85
RNF4P78317 HMGN2P31-201ENST00000432430 273 ntBASIC3.52□□□□□ -1.85
RNF4P78317 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.52□□□□□ -1.85
RNF4P78317 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.52□□□□□ -1.85
RNF4P78317 HMGB3P3-201ENST00000510526 400 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms