Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF33CP-201ENST00000432492 2030 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC1.9□□□□□ -2.1
COL4A4P53420 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
COL4A4P53420 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.9□□□□□ -2.11
COL4A4P53420 RNU6-179P-201ENST00000363350 107 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 Y_RNA.153-201ENST00000363615 91 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 RNU6-188P-201ENST00000364207 107 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 Y_RNA.489-201ENST00000384410 101 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 RNU6-342P-201ENST00000384521 104 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 Y_RNA.574-201ENST00000384766 95 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 RNU6-823P-201ENST00000391042 103 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 MIR548M-201ENST00000408260 86 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 RNU6-1050P-201ENST00000410388 107 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 RNU2-64P-201ENST00000411315 191 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 RNU6-387P-201ENST00000411331 105 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.9□□□□□ -2.11
COL4A4P53420 RPL36P19-201ENST00000430744 301 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC1.9□□□□□ -2.11
COL4A4P53420 PCNPP5-201ENST00000452246 481 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC1.9□□□□□ -2.11
COL4A4P53420 DYNLL1P5-201ENST00000467158 270 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 RPL21P93-201ENST00000480465 489 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 AC021382.1-201ENST00000483523 359 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 RNU6-27P-201ENST00000516146 107 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 RNU2-53P-201ENST00000516257 147 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 RNA5SP503-201ENST00000517047 117 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 CYCSP27-201ENST00000527643 293 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
COL4A4P53420 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.9□□□□□ -2.11
COL4A4P53420 AL133153.1-201ENST00000557756 303 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.9□□□□□ -2.11
COL4A4P53420 MIR5692C1-201ENST00000585309 91 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 BNIP3P16-201ENST00000589779 534 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 BNIP3P25-201ENST00000596023 559 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 AC104695.3-201ENST00000604052 296 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 MIR6734-201ENST00000621166 68 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 AL669831.3-213ENST00000636676 183 ntBASIC1.9□□□□□ -2.11
COL4A4P53420 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.89□□□□□ -2.11
COL4A4P53420 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC1.89□□□□□ -2.11
COL4A4P53420 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
COL4A4P53420 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
COL4A4P53420 SMIM11P1-201ENST00000369586 178 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 DEFB109C-201ENST00000382575 264 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 DEFB109B-201ENST00000382656 264 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 RNU6-26P-201ENST00000383985 107 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 Y_RNA.512-201ENST00000384518 102 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 RNU4-70P-201ENST00000384579 139 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 HSPE1P26-201ENST00000405341 275 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 RPS15AP10-201ENST00000432472 382 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 RPL23AP33-201ENST00000442301 452 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 AC104472.2-201ENST00000469035 601 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 AC087884.1-201ENST00000469738 328 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 RPL22P13-201ENST00000493291 347 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 Y_RNA.689-201ENST00000516589 107 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 RNU6-1332P-201ENST00000516666 104 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.89□□□□□ -2.11
COL4A4P53420 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
COL4A4P53420 CBX3P4-201ENST00000538909 354 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 AC092470.1-201ENST00000546187 132 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.89□□□□□ -2.11
COL4A4P53420 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.89□□□□□ -2.11
COL4A4P53420 AC019159.1-201ENST00000605094 187 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 PRR13P7-201ENST00000605538 430 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 AC100812.1-201ENST00000607622 580 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 U2.17-201ENST00000611454 95 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 AL021879.1-201ENST00000611756 288 ntBASIC1.89□□□□□ -2.11
COL4A4P53420 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
COL4A4P53420 AC131280.1-202ENST00000624067 4211 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.88□□□□□ -2.11
COL4A4P53420 UBE2L2-201ENST00000254302 429 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 RNU6-1284P-201ENST00000363701 100 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 RNU6-1243P-201ENST00000364028 107 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 SNORD48-201ENST00000364953 64 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 Y_RNA.364-201ENST00000365532 101 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 Y_RNA.389-201ENST00000383924 113 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 RNU6-472P-201ENST00000384299 107 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 RNU6-434P-201ENST00000384376 107 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 SNORD70.1-201ENST00000391007 85 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 RNA5SP111-201ENST00000411386 101 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 RPL19P1-201ENST00000411635 428 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 PGBD4P6-201ENST00000421501 610 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 CALM2P2-201ENST00000428512 440 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 MTND2P29-201ENST00000438595 412 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 TOMM22P6-201ENST00000465035 409 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 AC087879.1-201ENST00000474343 374 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 RPL21P103-201ENST00000479921 488 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 HMGB1P30-201ENST00000492455 606 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 AC025465.3-201ENST00000510570 311 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 RNU6-1092P-201ENST00000516955 87 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 RNU6-1213P-201ENST00000517075 94 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 AC087854.1-201ENST00000519706 414 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.88□□□□□ -2.11
COL4A4P53420 AC090115.3-201ENST00000553218 849 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.88□□□□□ -2.11
COL4A4P53420 MIR4504-201ENST00000577413 92 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 MIR3935-201ENST00000583472 104 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 MIR6515-201ENST00000619843 57 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms