Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU6-1303P-201ENST00000364841 107 ntBASIC1.62□□□□□ -2.15
MSH6P52701 SNORD116-8-201ENST00000384365 95 ntBASIC1.62□□□□□ -2.15
MSH6P52701 RNU6-1127P-201ENST00000384580 107 ntBASIC1.62□□□□□ -2.15
MSH6P52701 MIR29B2-201ENST00000385055 81 ntBASIC1.62□□□□□ -2.15
MSH6P52701 RNA5SP450-201ENST00000411206 102 ntBASIC1.62□□□□□ -2.15
MSH6P52701 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.62□□□□□ -2.15
MSH6P52701 MTCO2P34-201ENST00000421994 607 ntBASIC1.62□□□□□ -2.15
MSH6P52701 MTCO2P11-201ENST00000431069 680 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AC243964.1-201ENST00000441814 261 ntBASIC1.62□□□□□ -2.15
MSH6P52701 USP9YP29-201ENST00000445112 563 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.62□□□□□ -2.15
MSH6P52701 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.62□□□□□ -2.15
MSH6P52701 C1DP4-201ENST00000455429 424 ntBASIC1.62□□□□□ -2.15
MSH6P52701 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.62□□□□□ -2.15
MSH6P52701 RPS23P4-201ENST00000487908 423 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.62□□□□□ -2.15
MSH6P52701 AC098862.1-201ENST00000504991 413 ntBASIC1.62□□□□□ -2.15
MSH6P52701 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
MSH6P52701 AC105417.1-201ENST00000514691 285 ntBASIC1.62□□□□□ -2.15
MSH6P52701 RNU6-377P-201ENST00000515965 102 ntBASIC1.62□□□□□ -2.15
MSH6P52701 MTCO2P4-201ENST00000517968 247 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AP002963.1-201ENST00000530590 184 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AC007834.2-201ENST00000536310 343 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AC023050.3-201ENST00000541142 333 ntBASIC1.62□□□□□ -2.15
MSH6P52701 MIR4528-201ENST00000577763 90 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AC091135.1-201ENST00000585943 307 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AC025449.1-201ENST00000603896 529 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AC087752.4-201ENST00000605911 462 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AC109347.2-201ENST00000610220 349 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AC136475.10-201ENST00000620253 385 ntBASIC1.62□□□□□ -2.15
MSH6P52701 AC022418.1-201ENST00000624118 445 ntBASIC1.62□□□□□ -2.15
MSH6P52701 Y_RNA.178-201ENST00000363832 102 ntBASIC1.61□□□□□ -2.15
MSH6P52701 RNU4-42P-201ENST00000364738 142 ntBASIC1.61□□□□□ -2.15
MSH6P52701 RNU6-434P-201ENST00000384376 107 ntBASIC1.61□□□□□ -2.15
MSH6P52701 RNU6-348P-201ENST00000384386 107 ntBASIC1.61□□□□□ -2.15
MSH6P52701 SNORD70.1-201ENST00000391007 85 ntBASIC1.61□□□□□ -2.15
MSH6P52701 AC068050.1-201ENST00000394891 380 ntBASIC1.61□□□□□ -2.15
MSH6P52701 MIR1262-201ENST00000408276 93 ntBASIC1.61□□□□□ -2.15
MSH6P52701 RN7SKP142-201ENST00000411236 328 ntBASIC1.61□□□□□ -2.15
MSH6P52701 RPS15AP10-201ENST00000432472 382 ntBASIC1.61□□□□□ -2.15
MSH6P52701 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.61□□□□□ -2.15
MSH6P52701 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.61□□□□□ -2.15
MSH6P52701 MTND1P27-201ENST00000451117 902 ntBASIC1.61□□□□□ -2.15
MSH6P52701 AC013470.1-201ENST00000453438 462 ntBASIC1.61□□□□□ -2.15
MSH6P52701 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.61□□□□□ -2.15
MSH6P52701 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.61□□□□□ -2.15
MSH6P52701 RNU2-69P-201ENST00000516061 100 ntBASIC1.61□□□□□ -2.15
MSH6P52701 RNU5F-2P-201ENST00000516066 82 ntBASIC1.61□□□□□ -2.15
MSH6P52701 AC090821.2-201ENST00000523552 176 ntBASIC1.61□□□□□ -2.15
MSH6P52701 AC022880.1-201ENST00000534017 973 ntBASIC1.61□□□□□ -2.15
MSH6P52701 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.61□□□□□ -2.15
MSH6P52701 MTCO3P23-201ENST00000561363 289 ntBASIC1.61□□□□□ -2.15
MSH6P52701 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.61□□□□□ -2.15
MSH6P52701 AC211469.2-201ENST00000605461 205 ntBASIC1.61□□□□□ -2.15
MSH6P52701 AC073114.1-201ENST00000612027 490 ntBASIC1.61□□□□□ -2.15
MSH6P52701 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.61□□□□□ -2.15
MSH6P52701 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
MSH6P52701 AP000568.1-201ENST00000282964 442 ntBASIC1.6□□□□□ -2.15
MSH6P52701 MIR373-201ENST00000362273 69 ntBASIC1.6□□□□□ -2.15
MSH6P52701 RNA5SP276-201ENST00000362580 94 ntBASIC1.6□□□□□ -2.15
MSH6P52701 RNU6-1120P-201ENST00000362988 108 ntBASIC1.6□□□□□ -2.15
MSH6P52701 Y_RNA.480-201ENST00000384364 102 ntBASIC1.6□□□□□ -2.15
MSH6P52701 SNORA16.2-201ENST00000390991 127 ntBASIC1.6□□□□□ -2.15
MSH6P52701 RNU2-29P-201ENST00000410423 189 ntBASIC1.6□□□□□ -2.15
MSH6P52701 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.6□□□□□ -2.15
MSH6P52701 CBX3P6-201ENST00000430257 527 ntBASIC1.6□□□□□ -2.15
MSH6P52701 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH6P52701 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH6P52701 PRPS1P1-201ENST00000445305 876 ntBASIC1.6□□□□□ -2.15
MSH6P52701 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH6P52701 PRELID3BP1-201ENST00000457142 540 ntBASIC1.6□□□□□ -2.15
MSH6P52701 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH6P52701 SCARNA18-201ENST00000459004 134 ntBASIC1.6□□□□□ -2.15
MSH6P52701 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH6P52701 AC079382.1-201ENST00000493346 557 ntBASIC1.6□□□□□ -2.15
MSH6P52701 MTND2P33-201ENST00000506452 1031 ntBASIC1.6□□□□□ -2.15
MSH6P52701 SNORA31.16-201ENST00000516773 139 ntBASIC1.6□□□□□ -2.15
MSH6P52701 SNORA25.17-201ENST00000517184 124 ntBASIC1.6□□□□□ -2.15
MSH6P52701 AC109479.2-201ENST00000517842 174 ntBASIC1.6□□□□□ -2.15
MSH6P52701 AP005597.4-201ENST00000526762 229 ntBASIC1.6□□□□□ -2.15
MSH6P52701 OSBPL9P5-201ENST00000542581 171 ntBASIC1.6□□□□□ -2.15
MSH6P52701 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.6□□□□□ -2.15
MSH6P52701 HSBP1P1-201ENST00000555205 166 ntBASIC1.6□□□□□ -2.15
MSH6P52701 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH6P52701 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH6P52701 AC068790.2-201ENST00000602601 557 ntBASIC1.6□□□□□ -2.15
MSH6P52701 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
MSH6P52701 AC008147.4-201ENST00000617570 1204 ntBASIC1.6□□□□□ -2.15
MSH6P52701 AC097372.5-201ENST00000623665 376 ntBASIC1.6□□□□□ -2.15
MSH6P52701 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH6P52701 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.6□□□□□ -2.15
MSH6P52701 ZNF680P1-201ENST00000436625 1469 ntBASIC1.6□□□□□ -2.15
MSH6P52701 Y_RNA.159-201ENST00000363674 87 ntBASIC1.59□□□□□ -2.15
MSH6P52701 RNA5SP465-201ENST00000391195 109 ntBASIC1.59□□□□□ -2.15
MSH6P52701 MIR1283-2-201ENST00000408621 87 ntBASIC1.59□□□□□ -2.15
MSH6P52701 Y_RNA.597-201ENST00000410463 100 ntBASIC1.59□□□□□ -2.15
MSH6P52701 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.59□□□□□ -2.15
MSH6P52701 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.59□□□□□ -2.15
MSH6P52701 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
MSH6P52701 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms