Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MIR4801-201ENST00000582704 82 ntBASIC2.67□□□□□ -1.98
CTCFP49711 AC091135.1-201ENST00000585943 307 ntBASIC2.67□□□□□ -1.98
CTCFP49711 RBM11P1-201ENST00000604951 799 ntBASIC2.67□□□□□ -1.98
CTCFP49711 HMGB1P24-202ENST00000615653 685 ntBASIC2.67□□□□□ -1.98
CTCFP49711 AC007792.1-201ENST00000623023 402 ntBASIC2.67□□□□□ -1.98
CTCFP49711 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
CTCFP49711 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
CTCFP49711 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.66□□□□□ -1.98
CTCFP49711 Y_RNA.279-201ENST00000364763 95 ntBASIC2.66□□□□□ -1.98
CTCFP49711 AL590632.1-201ENST00000424289 371 ntBASIC2.66□□□□□ -1.98
CTCFP49711 MTCO3P46-201ENST00000425787 232 ntBASIC2.66□□□□□ -1.98
CTCFP49711 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.66□□□□□ -1.98
CTCFP49711 RNU6-329P-201ENST00000459618 107 ntBASIC2.66□□□□□ -1.98
CTCFP49711 AL121594.1-201ENST00000475906 575 ntBASIC2.66□□□□□ -1.98
CTCFP49711 PRDX4P1-201ENST00000507189 574 ntBASIC2.66□□□□□ -1.98
CTCFP49711 AC008526.1-201ENST00000509149 338 ntBASIC2.66□□□□□ -1.98
CTCFP49711 AL117351.2-201ENST00000513571 157 ntBASIC2.66□□□□□ -1.98
CTCFP49711 RNU6-1088P-201ENST00000516850 104 ntBASIC2.66□□□□□ -1.98
CTCFP49711 AC087241.2-201ENST00000535801 324 ntBASIC2.66□□□□□ -1.98
CTCFP49711 AP001836.1-201ENST00000604675 523 ntBASIC2.66□□□□□ -1.98
CTCFP49711 AC093913.1-201ENST00000614178 329 ntBASIC2.66□□□□□ -1.98
CTCFP49711 U4atac.1-201ENST00000618345 95 ntBASIC2.66□□□□□ -1.98
CTCFP49711 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.66□□□□□ -1.98
CTCFP49711 AC099654.14-201ENST00000638599 341 ntBASIC2.66□□□□□ -1.98
CTCFP49711 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
CTCFP49711 RNU6-212P-201ENST00000362642 104 ntBASIC2.65□□□□□ -1.99
CTCFP49711 RNU6-1285P-201ENST00000363480 105 ntBASIC2.65□□□□□ -1.99
CTCFP49711 Y_RNA.160-201ENST00000363677 92 ntBASIC2.65□□□□□ -1.99
CTCFP49711 Y_RNA.301-201ENST00000364990 103 ntBASIC2.65□□□□□ -1.99
CTCFP49711 SNORD116-11-201ENST00000383882 92 ntBASIC2.65□□□□□ -1.99
CTCFP49711 RNU6-43P-201ENST00000384302 107 ntBASIC2.65□□□□□ -1.99
CTCFP49711 RNU6-95P-201ENST00000384697 107 ntBASIC2.65□□□□□ -1.99
CTCFP49711 RNU6-1106P-201ENST00000390845 107 ntBASIC2.65□□□□□ -1.99
CTCFP49711 RNU6-876P-201ENST00000391295 104 ntBASIC2.65□□□□□ -1.99
CTCFP49711 RNA5SP270-201ENST00000411361 118 ntBASIC2.65□□□□□ -1.99
CTCFP49711 AL030996.1-201ENST00000411430 235 ntBASIC2.65□□□□□ -1.99
CTCFP49711 AP000275.1-201ENST00000411943 390 ntBASIC2.65□□□□□ -1.99
CTCFP49711 IFNA20P-201ENST00000436840 528 ntBASIC2.65□□□□□ -1.99
CTCFP49711 USP9YP8-201ENST00000441913 500 ntBASIC2.65□□□□□ -1.99
CTCFP49711 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.65□□□□□ -1.99
CTCFP49711 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.65□□□□□ -1.99
CTCFP49711 MTND1P11-201ENST00000456661 876 ntBASIC2.65□□□□□ -1.99
CTCFP49711 AC140059.1-201ENST00000489238 361 ntBASIC2.65□□□□□ -1.99
CTCFP49711 AC116353.2-201ENST00000505332 712 ntBASIC2.65□□□□□ -1.99
CTCFP49711 AC096745.1-201ENST00000509945 370 ntBASIC2.65□□□□□ -1.99
CTCFP49711 RNU2-53P-201ENST00000516257 147 ntBASIC2.65□□□□□ -1.99
CTCFP49711 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.65□□□□□ -1.99
CTCFP49711 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.65□□□□□ -1.99
CTCFP49711 MYL12BP1-201ENST00000569826 507 ntBASIC2.65□□□□□ -1.99
CTCFP49711 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.65□□□□□ -1.99
CTCFP49711 MIR4742-201ENST00000581069 85 ntBASIC2.65□□□□□ -1.99
CTCFP49711 MIR5092-201ENST00000583139 88 ntBASIC2.65□□□□□ -1.99
CTCFP49711 AC009233.1-201ENST00000616477 371 ntBASIC2.65□□□□□ -1.99
CTCFP49711 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
CTCFP49711 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
CTCFP49711 RNU6-562P-201ENST00000362731 107 ntBASIC2.64□□□□□ -1.99
CTCFP49711 RNU6-1317P-201ENST00000364582 104 ntBASIC2.64□□□□□ -1.99
CTCFP49711 RNU1-52P-201ENST00000384190 164 ntBASIC2.64□□□□□ -1.99
CTCFP49711 RNU6-510P-201ENST00000391239 108 ntBASIC2.64□□□□□ -1.99
CTCFP49711 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
CTCFP49711 RNU6-325P-201ENST00000411132 105 ntBASIC2.64□□□□□ -1.99
CTCFP49711 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.64□□□□□ -1.99
CTCFP49711 RPL23AP95-201ENST00000426806 265 ntBASIC2.64□□□□□ -1.99
CTCFP49711 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.64□□□□□ -1.99
CTCFP49711 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.64□□□□□ -1.99
CTCFP49711 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.64□□□□□ -1.99
CTCFP49711 AL645568.3-201ENST00000433683 316 ntBASIC2.64□□□□□ -1.99
CTCFP49711 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.64□□□□□ -1.99
CTCFP49711 RNU7-187P-201ENST00000458985 68 ntBASIC2.64□□□□□ -1.99
CTCFP49711 RPS29P27-201ENST00000463711 170 ntBASIC2.64□□□□□ -1.99
CTCFP49711 AC025465.4-201ENST00000513422 638 ntBASIC2.64□□□□□ -1.99
CTCFP49711 RNU6-612P-201ENST00000516909 102 ntBASIC2.64□□□□□ -1.99
CTCFP49711 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.64□□□□□ -1.99
CTCFP49711 AP005902.1-201ENST00000521358 186 ntBASIC2.64□□□□□ -1.99
CTCFP49711 PRELID2P1-201ENST00000552837 301 ntBASIC2.64□□□□□ -1.99
CTCFP49711 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.64□□□□□ -1.99
CTCFP49711 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.64□□□□□ -1.99
CTCFP49711 CPDP1-201ENST00000579660 283 ntBASIC2.64□□□□□ -1.99
CTCFP49711 MIR5007-201ENST00000583098 95 ntBASIC2.64□□□□□ -1.99
CTCFP49711 AC011712.1-201ENST00000588959 234 ntBASIC2.64□□□□□ -1.99
CTCFP49711 AL713866.2-201ENST00000603579 219 ntBASIC2.64□□□□□ -1.99
CTCFP49711 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CTCFP49711 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.63□□□□□ -1.99
CTCFP49711 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
CTCFP49711 RNU6-655P-201ENST00000362858 107 ntBASIC2.63□□□□□ -1.99
CTCFP49711 RNU6-1210P-201ENST00000363775 107 ntBASIC2.63□□□□□ -1.99
CTCFP49711 RNU6-1141P-201ENST00000364520 107 ntBASIC2.63□□□□□ -1.99
CTCFP49711 RNU6-42P-201ENST00000384165 107 ntBASIC2.63□□□□□ -1.99
CTCFP49711 AL023284.1-201ENST00000403956 276 ntBASIC2.63□□□□□ -1.99
CTCFP49711 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.63□□□□□ -1.99
CTCFP49711 AC090515.1-201ENST00000465295 476 ntBASIC2.63□□□□□ -1.99
CTCFP49711 RPL9P9-202ENST00000466501 579 ntBASIC2.63□□□□□ -1.99
CTCFP49711 MTCO1P29-201ENST00000496868 288 ntBASIC2.63□□□□□ -1.99
CTCFP49711 AC091874.1-201ENST00000511402 339 ntBASIC2.63□□□□□ -1.99
CTCFP49711 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.63□□□□□ -1.99
CTCFP49711 RNU6-273P-201ENST00000516937 96 ntBASIC2.63□□□□□ -1.99
CTCFP49711 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.63□□□□□ -1.99
CTCFP49711 SUB1P3-201ENST00000564581 315 ntBASIC2.63□□□□□ -1.99
CTCFP49711 AC093249.1-201ENST00000567049 203 ntBASIC2.63□□□□□ -1.99
CTCFP49711 AC002984.1-201ENST00000591692 448 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms