Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 Y_RNA.597-201ENST00000410463 100 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 RPS20P15-201ENST00000412792 311 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.41□□□□□ -2.18
CXCL12P48061 AC096920.1-201ENST00000423991 241 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 USP9YP18-201ENST00000425912 695 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 AC073415.1-201ENST00000449240 153 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 AL031274.1-201ENST00000450334 232 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.41□□□□□ -2.18
CXCL12P48061 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.41□□□□□ -2.18
CXCL12P48061 RNU7-180P-201ENST00000459240 63 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 MTND2P33-201ENST00000506452 1031 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.41□□□□□ -2.18
CXCL12P48061 AC009646.1-201ENST00000510455 318 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.41□□□□□ -2.18
CXCL12P48061 AC010493.1-201ENST00000513479 292 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.41□□□□□ -2.18
CXCL12P48061 RN7SKP256-201ENST00000517201 314 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 AC026271.5-201ENST00000577873 130 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 AC243960.4-201ENST00000600532 288 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 SNRPGP17-201ENST00000603780 214 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 AC091805.2-201ENST00000603848 235 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.41□□□□□ -2.18
CXCL12P48061 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 AL354950.2-201ENST00000617939 290 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 AC005609.4-201ENST00000625071 447 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 MTND4P14-201ENST00000435799 1354 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 ZNF702P-202ENST00000434269 1966 ntBASIC1.41□□□□□ -2.18
CXCL12P48061 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.41□□□□□ -2.18
CXCL12P48061 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
CXCL12P48061 RNU4-42P-201ENST00000364738 142 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 Y_RNA.296-201ENST00000364930 108 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 RNU6-827P-201ENST00000365553 106 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 Y_RNA.399-201ENST00000383955 105 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 SNORD116-9-201ENST00000384000 95 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 RNU6-611P-201ENST00000384276 104 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 SNORD116-3-201ENST00000384287 95 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 SNORD116-7-201ENST00000384404 95 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 SNORD116-5-201ENST00000384462 95 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 Y_RNA.540-201ENST00000384638 111 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 MIR29B2-201ENST00000385055 81 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 RNU6-1245P-201ENST00000411130 106 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 RNA5SP450-201ENST00000411206 102 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 AL117339.3-201ENST00000418733 162 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.4□□□□□ -2.19
CXCL12P48061 IFNA20P-201ENST00000436840 528 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 AC013470.1-201ENST00000453438 462 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 RPL23AP3-201ENST00000453844 468 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 PRELID3BP1-201ENST00000457142 540 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.4□□□□□ -2.19
CXCL12P48061 RPL31P3-201ENST00000458430 332 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 RNU7-167P-201ENST00000459160 62 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 AC087884.1-201ENST00000469738 328 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.4□□□□□ -2.19
CXCL12P48061 AC108078.1-201ENST00000508073 725 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 AC109479.2-201ENST00000517842 174 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 AP005660.1-201ENST00000522972 293 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.4□□□□□ -2.19
CXCL12P48061 AC022616.8-201ENST00000533569 253 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.4□□□□□ -2.19
CXCL12P48061 AC103996.1-201ENST00000555468 102 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 MTND1P15-201ENST00000579262 949 ntBASIC1.4□□□□□ -2.19
CXCL12P48061 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
CXCL12P48061 Y_RNA.1-201ENST00000352915 104 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 RNU1-22P-201ENST00000363334 158 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 RNU6-43P-201ENST00000384302 107 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 SNORD116-1-201ENST00000384335 95 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.39□□□□□ -2.19
CXCL12P48061 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.39□□□□□ -2.19
CXCL12P48061 AL606489.2-201ENST00000433886 234 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.39□□□□□ -2.19
CXCL12P48061 RPS4XP11-201ENST00000446897 772 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.39□□□□□ -2.19
CXCL12P48061 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.39□□□□□ -2.19
CXCL12P48061 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.39□□□□□ -2.19
CXCL12P48061 AL163973.1-201ENST00000484753 577 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.39□□□□□ -2.19
CXCL12P48061 HMGB1P29-201ENST00000505659 499 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 CCDC34P1-201ENST00000507441 517 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 AC091133.4-201ENST00000511142 308 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 AC092436.3-201ENST00000511788 257 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 Y_RNA.670-201ENST00000516255 105 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.39□□□□□ -2.19
CXCL12P48061 MTND2P38-201ENST00000522536 667 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 AP005639.2-201ENST00000527592 928 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.39□□□□□ -2.19
CXCL12P48061 AC018630.3-201ENST00000542637 96 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 MIR3611-201ENST00000584484 83 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 BNIP3P16-201ENST00000589779 534 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 AL359314.1-201ENST00000616913 261 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 MIR1248-201ENST00000629190 106 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 AL133216.2-202ENST00000634512 349 ntBASIC1.39□□□□□ -2.19
CXCL12P48061 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
CXCL12P48061 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.38□□□□□ -2.19
CXCL12P48061 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
CXCL12P48061 MIR96-201ENST00000362288 78 ntBASIC1.38□□□□□ -2.19
CXCL12P48061 RNU4-15P-201ENST00000362613 141 ntBASIC1.38□□□□□ -2.19
CXCL12P48061 RNU6-1119P-201ENST00000384349 108 ntBASIC1.38□□□□□ -2.19
CXCL12P48061 Y_RNA.582-201ENST00000391023 95 ntBASIC1.38□□□□□ -2.19
CXCL12P48061 RNU4-55P-201ENST00000410731 137 ntBASIC1.38□□□□□ -2.19
CXCL12P48061 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms