Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 RNY1P8-201ENST00000383970 114 ntBASIC0.17□□□□□ -2.38
SDC4P31431 RNU6-163P-201ENST00000384396 106 ntBASIC0.17□□□□□ -2.38
SDC4P31431 MIR216A-201ENST00000385063 110 ntBASIC0.17□□□□□ -2.38
SDC4P31431 SNORD99-201ENST00000408612 74 ntBASIC0.17□□□□□ -2.38
SDC4P31431 RNU2-70P-201ENST00000410718 179 ntBASIC0.17□□□□□ -2.38
SDC4P31431 C1DP2-201ENST00000418167 426 ntBASIC0.17□□□□□ -2.38
SDC4P31431 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.17□□□□□ -2.38
SDC4P31431 AC010154.1-201ENST00000425857 269 ntBASIC0.17□□□□□ -2.38
SDC4P31431 AC073614.1-201ENST00000438690 650 ntBASIC0.17□□□□□ -2.38
SDC4P31431 MTCYBP42-201ENST00000444653 1130 ntBASIC0.17□□□□□ -2.38
SDC4P31431 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC0.17□□□□□ -2.38
SDC4P31431 C1DP4-201ENST00000455429 424 ntBASIC0.17□□□□□ -2.38
SDC4P31431 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
SDC4P31431 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.17□□□□□ -2.38
SDC4P31431 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC0.17□□□□□ -2.38
SDC4P31431 RNU6-947P-201ENST00000516264 106 ntBASIC0.17□□□□□ -2.38
SDC4P31431 Y_RNA.689-201ENST00000516589 107 ntBASIC0.17□□□□□ -2.38
SDC4P31431 RNU6-1098P-201ENST00000516772 96 ntBASIC0.17□□□□□ -2.38
SDC4P31431 RNU6-856P-201ENST00000516959 98 ntBASIC0.17□□□□□ -2.38
SDC4P31431 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.17□□□□□ -2.38
SDC4P31431 ZNF321P-202ENST00000550843 495 ntBASIC0.17□□□□□ -2.38
SDC4P31431 DEFB131E-202ENST00000602581 683 ntBASIC0.17□□□□□ -2.38
SDC4P31431 AC012507.3-201ENST00000603556 477 ntBASIC0.17□□□□□ -2.38
SDC4P31431 AC099785.1-201ENST00000605697 437 ntBASIC0.17□□□□□ -2.38
SDC4P31431 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.17□□□□□ -2.38
SDC4P31431 AC007742.2-201ENST00000618226 398 ntBASIC0.17□□□□□ -2.38
SDC4P31431 FRG1KP-201ENST00000623592 341 ntBASIC0.17□□□□□ -2.38
SDC4P31431 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.17□□□□□ -2.38
SDC4P31431 CASC19-280ENST00000642102 1351 ntBASIC0.17□□□□□ -2.38
SDC4P31431 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.16□□□□□ -2.38
SDC4P31431 AC092104.1-201ENST00000497346 1441 ntBASIC0.16□□□□□ -2.38
SDC4P31431 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC0.16□□□□□ -2.38
SDC4P31431 RNU6-1285P-201ENST00000363480 105 ntBASIC0.16□□□□□ -2.38
SDC4P31431 RNU6-142P-201ENST00000384019 107 ntBASIC0.16□□□□□ -2.38
SDC4P31431 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.16□□□□□ -2.38
SDC4P31431 RNA5SP109-201ENST00000391010 116 ntBASIC0.16□□□□□ -2.38
SDC4P31431 RNU4-22P-201ENST00000411058 166 ntBASIC0.16□□□□□ -2.38
SDC4P31431 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.16□□□□□ -2.38
SDC4P31431 AC002486.1-201ENST00000435098 391 ntBASIC0.16□□□□□ -2.38
SDC4P31431 RPEP5-201ENST00000441137 268 ntBASIC0.16□□□□□ -2.38
SDC4P31431 DAP3P1-201ENST00000441522 278 ntBASIC0.16□□□□□ -2.38
SDC4P31431 AL353718.1-201ENST00000451028 517 ntBASIC0.16□□□□□ -2.38
SDC4P31431 MTND3P5-201ENST00000512798 333 ntBASIC0.16□□□□□ -2.38
SDC4P31431 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
SDC4P31431 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC0.16□□□□□ -2.38
SDC4P31431 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC0.16□□□□□ -2.38
SDC4P31431 AL360219.1-201ENST00000610230 366 ntBASIC0.16□□□□□ -2.38
SDC4P31431 AC116165.2-201ENST00000616705 206 ntBASIC0.16□□□□□ -2.38
SDC4P31431 RMST_7.1-201ENST00000621935 268 ntBASIC0.16□□□□□ -2.38
SDC4P31431 RNU6-190P-201ENST00000384154 102 ntBASIC0.15□□□□□ -2.39
SDC4P31431 RNU6-505P-201ENST00000384427 107 ntBASIC0.15□□□□□ -2.39
SDC4P31431 SNORA75.2-201ENST00000391138 150 ntBASIC0.15□□□□□ -2.39
SDC4P31431 SNORA75.3-201ENST00000391231 150 ntBASIC0.15□□□□□ -2.39
SDC4P31431 MTCYBP2-201ENST00000407745 171 ntBASIC0.15□□□□□ -2.39
SDC4P31431 VPS26BP1-201ENST00000417155 755 ntBASIC0.15□□□□□ -2.39
SDC4P31431 AL117351.1-201ENST00000438864 766 ntBASIC0.15□□□□□ -2.39
SDC4P31431 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC0.15□□□□□ -2.39
SDC4P31431 AL606517.2-201ENST00000442855 241 ntBASIC0.15□□□□□ -2.39
SDC4P31431 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.15□□□□□ -2.39
SDC4P31431 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC0.15□□□□□ -2.39
SDC4P31431 RNU7-90P-201ENST00000459216 62 ntBASIC0.15□□□□□ -2.39
SDC4P31431 RNU7-14P-201ENST00000459331 62 ntBASIC0.15□□□□□ -2.39
SDC4P31431 RNU7-21P-201ENST00000459430 62 ntBASIC0.15□□□□□ -2.39
SDC4P31431 AL163973.1-201ENST00000484753 577 ntBASIC0.15□□□□□ -2.39
SDC4P31431 HMGN1P12-201ENST00000499125 195 ntBASIC0.15□□□□□ -2.39
SDC4P31431 AC022493.2-201ENST00000506122 481 ntBASIC0.15□□□□□ -2.39
SDC4P31431 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.15□□□□□ -2.39
SDC4P31431 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.15□□□□□ -2.39
SDC4P31431 AC025627.3-201ENST00000582078 182 ntBASIC0.15□□□□□ -2.39
SDC4P31431 AC017083.3-201ENST00000609955 700 ntBASIC0.15□□□□□ -2.39
SDC4P31431 AC092106.3-201ENST00000611308 722 ntBASIC0.15□□□□□ -2.39
SDC4P31431 U6.42-201ENST00000618440 107 ntBASIC0.15□□□□□ -2.39
SDC4P31431 PVT1_3.1-201ENST00000620853 95 ntBASIC0.15□□□□□ -2.39
SDC4P31431 MIR924-201ENST00000638017 53 ntBASIC0.15□□□□□ -2.39
SDC4P31431 MTND5P16-201ENST00000460269 1703 ntBASIC0.14□□□□□ -2.39
SDC4P31431 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
SDC4P31431 RNU6-877P-201ENST00000383868 107 ntBASIC0.14□□□□□ -2.39
SDC4P31431 RNU6-946P-201ENST00000383878 107 ntBASIC0.14□□□□□ -2.39
SDC4P31431 SNORD41-201ENST00000386967 70 ntBASIC0.14□□□□□ -2.39
SDC4P31431 SNORA16.2-201ENST00000390991 127 ntBASIC0.14□□□□□ -2.39
SDC4P31431 AL355796.1-201ENST00000406706 323 ntBASIC0.14□□□□□ -2.39
SDC4P31431 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC0.14□□□□□ -2.39
SDC4P31431 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.14□□□□□ -2.39
SDC4P31431 NFU1P2-201ENST00000448700 469 ntBASIC0.14□□□□□ -2.39
SDC4P31431 MTND2P3-201ENST00000452458 470 ntBASIC0.14□□□□□ -2.39
SDC4P31431 SRRM1P2-201ENST00000464531 1192 ntBASIC0.14□□□□□ -2.39
SDC4P31431 AC092989.1-201ENST00000481235 277 ntBASIC0.14□□□□□ -2.39
SDC4P31431 AC011406.1-201ENST00000512440 370 ntBASIC0.14□□□□□ -2.39
SDC4P31431 DEFB130C-202ENST00000530001 230 ntBASIC0.14□□□□□ -2.39
SDC4P31431 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC0.14□□□□□ -2.39
SDC4P31431 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC0.14□□□□□ -2.39
SDC4P31431 AP002802.2-201ENST00000605877 235 ntBASIC0.14□□□□□ -2.39
SDC4P31431 AC078880.5-201ENST00000617845 421 ntBASIC0.14□□□□□ -2.39
SDC4P31431 AP002782.1-201ENST00000623107 614 ntBASIC0.14□□□□□ -2.39
SDC4P31431 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.14□□□□□ -2.39
SDC4P31431 MIR338-201ENST00000636369 67 ntBASIC0.14□□□□□ -2.39
SDC4P31431 SNORD98-201ENST00000636377 67 ntBASIC0.14□□□□□ -2.39
SDC4P31431 AC100810.6-201ENST00000638068 285 ntBASIC0.14□□□□□ -2.39
SDC4P31431 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
SDC4P31431 RNU6-349P-201ENST00000362402 107 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms