Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.57□□□□□ -2
HOXC9P31274 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.57□□□□□ -2
HOXC9P31274 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.57□□□□□ -2
HOXC9P31274 AC091135.1-201ENST00000585943 307 ntBASIC2.57□□□□□ -2
HOXC9P31274 AC073410.2-201ENST00000603240 332 ntBASIC2.57□□□□□ -2
HOXC9P31274 AC009994.1-201ENST00000606889 253 ntBASIC2.57□□□□□ -2
HOXC9P31274 RNU6-91P-201ENST00000607774 107 ntBASIC2.57□□□□□ -2
HOXC9P31274 MIR6128-201ENST00000615528 109 ntBASIC2.57□□□□□ -2
HOXC9P31274 AC063943.3-201ENST00000615562 356 ntBASIC2.57□□□□□ -2
HOXC9P31274 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.57□□□□□ -2
HOXC9P31274 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.57□□□□□ -2
HOXC9P31274 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.57□□□□□ -2
HOXC9P31274 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
HOXC9P31274 AC080128.1-201ENST00000474389 1917 ntBASIC2.56□□□□□ -2
HOXC9P31274 Y_RNA.140-201ENST00000363474 103 ntBASIC2.56□□□□□ -2
HOXC9P31274 Y_RNA.142-201ENST00000363491 102 ntBASIC2.56□□□□□ -2
HOXC9P31274 RNA5SP160-201ENST00000364866 120 ntBASIC2.56□□□□□ -2
HOXC9P31274 MIR517A-201ENST00000385001 87 ntBASIC2.56□□□□□ -2
HOXC9P31274 AC097463.2-201ENST00000421074 142 ntBASIC2.56□□□□□ -2
HOXC9P31274 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.56□□□□□ -2
HOXC9P31274 PCMTD1P1-201ENST00000455560 355 ntBASIC2.56□□□□□ -2
HOXC9P31274 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.56□□□□□ -2
HOXC9P31274 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.56□□□□□ -2
HOXC9P31274 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.56□□□□□ -2
HOXC9P31274 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.56□□□□□ -2
HOXC9P31274 MIR3976-201ENST00000606807 139 ntBASIC2.56□□□□□ -2
HOXC9P31274 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.56□□□□□ -2
HOXC9P31274 AC104260.1-201ENST00000616660 539 ntBASIC2.56□□□□□ -2
HOXC9P31274 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.56□□□□□ -2
HOXC9P31274 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
HOXC9P31274 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.56□□□□□ -2
HOXC9P31274 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.56□□□□□ -2
HOXC9P31274 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
HOXC9P31274 AL513475.1-201ENST00000406602 315 ntBASIC2.55□□□□□ -2
HOXC9P31274 RNA5SP390-201ENST00000410191 113 ntBASIC2.55□□□□□ -2
HOXC9P31274 RPL30P4-201ENST00000429309 333 ntBASIC2.55□□□□□ -2
HOXC9P31274 AL645568.3-201ENST00000433683 316 ntBASIC2.55□□□□□ -2
HOXC9P31274 RPS3AP52-201ENST00000435639 297 ntBASIC2.55□□□□□ -2
HOXC9P31274 MTND1P17-201ENST00000448961 204 ntBASIC2.55□□□□□ -2
HOXC9P31274 AC107399.1-201ENST00000451226 265 ntBASIC2.55□□□□□ -2
HOXC9P31274 AC140059.1-201ENST00000489238 361 ntBASIC2.55□□□□□ -2
HOXC9P31274 RPS29P11-201ENST00000496507 171 ntBASIC2.55□□□□□ -2
HOXC9P31274 MTND5P5-201ENST00000503764 376 ntBASIC2.55□□□□□ -2
HOXC9P31274 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.55□□□□□ -2
HOXC9P31274 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.55□□□□□ -2
HOXC9P31274 AC079598.5-201ENST00000547460 117 ntBASIC2.55□□□□□ -2
HOXC9P31274 AC090616.3-201ENST00000582184 217 ntBASIC2.55□□□□□ -2
HOXC9P31274 AL627309.6-201ENST00000606857 840 ntBASIC2.55□□□□□ -2
HOXC9P31274 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.55□□□□□ -2
HOXC9P31274 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.54□□□□□ -2
HOXC9P31274 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HOXC9P31274 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
HOXC9P31274 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.54□□□□□ -2
HOXC9P31274 RNU6-486P-201ENST00000363116 107 ntBASIC2.54□□□□□ -2
HOXC9P31274 RNU6-529P-201ENST00000363383 104 ntBASIC2.54□□□□□ -2
HOXC9P31274 RNU6-461P-201ENST00000364195 107 ntBASIC2.54□□□□□ -2
HOXC9P31274 RNU6-43P-201ENST00000384302 107 ntBASIC2.54□□□□□ -2
HOXC9P31274 RNU6-1009P-201ENST00000390996 107 ntBASIC2.54□□□□□ -2
HOXC9P31274 MIR548K-201ENST00000408406 116 ntBASIC2.54□□□□□ -2
HOXC9P31274 AC074085.1-201ENST00000413598 418 ntBASIC2.54□□□□□ -2
HOXC9P31274 AC023141.11-201ENST00000508864 202 ntBASIC2.54□□□□□ -2
HOXC9P31274 RNU1-54P-201ENST00000517181 120 ntBASIC2.54□□□□□ -2
HOXC9P31274 AC105029.1-201ENST00000520250 669 ntBASIC2.54□□□□□ -2
HOXC9P31274 AP005902.1-201ENST00000521358 186 ntBASIC2.54□□□□□ -2
HOXC9P31274 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.54□□□□□ -2
HOXC9P31274 MIR3117-201ENST00000584034 78 ntBASIC2.54□□□□□ -2
HOXC9P31274 VN1R107P-201ENST00000601784 209 ntBASIC2.54□□□□□ -2
HOXC9P31274 AP001836.1-201ENST00000604675 523 ntBASIC2.54□□□□□ -2
HOXC9P31274 AC019193.3-201ENST00000609144 554 ntBASIC2.54□□□□□ -2
HOXC9P31274 AL133215.3-201ENST00000609801 448 ntBASIC2.54□□□□□ -2
HOXC9P31274 AL161423.1-201ENST00000613700 262 ntBASIC2.54□□□□□ -2
HOXC9P31274 AC007792.1-201ENST00000623023 402 ntBASIC2.54□□□□□ -2
HOXC9P31274 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.54□□□□□ -2
HOXC9P31274 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HOXC9P31274 AC009541.1-201ENST00000438279 2662 ntBASIC2.53□□□□□ -2
HOXC9P31274 AC135776.4-201ENST00000624300 1904 ntBASIC2.53□□□□□ -2
HOXC9P31274 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HOXC9P31274 Y_RNA.40-201ENST00000362645 93 ntBASIC2.53□□□□□ -2
HOXC9P31274 RNU6-1010P-201ENST00000362757 107 ntBASIC2.53□□□□□ -2
HOXC9P31274 RNU5E-4P-201ENST00000364931 120 ntBASIC2.53□□□□□ -2
HOXC9P31274 RNU6-867P-201ENST00000364956 107 ntBASIC2.53□□□□□ -2
HOXC9P31274 Y_RNA.473-201ENST00000384333 102 ntBASIC2.53□□□□□ -2
HOXC9P31274 RNU1-57P-201ENST00000384491 166 ntBASIC2.53□□□□□ -2
HOXC9P31274 MIR186-201ENST00000384988 86 ntBASIC2.53□□□□□ -2
HOXC9P31274 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
HOXC9P31274 RNU2-20P-201ENST00000410425 191 ntBASIC2.53□□□□□ -2
HOXC9P31274 RNU2-23P-201ENST00000410545 195 ntBASIC2.53□□□□□ -2
HOXC9P31274 AL445687.1-201ENST00000439946 251 ntBASIC2.53□□□□□ -2
HOXC9P31274 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.53□□□□□ -2
HOXC9P31274 AC093019.1-201ENST00000443135 252 ntBASIC2.53□□□□□ -2
HOXC9P31274 AL031659.1-201ENST00000447075 539 ntBASIC2.53□□□□□ -2
HOXC9P31274 AL021397.1-201ENST00000451806 248 ntBASIC2.53□□□□□ -2
HOXC9P31274 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.53□□□□□ -2
HOXC9P31274 AIG1P1-201ENST00000503376 148 ntBASIC2.53□□□□□ -2
HOXC9P31274 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.53□□□□□ -2
HOXC9P31274 AC091874.1-201ENST00000511402 339 ntBASIC2.53□□□□□ -2
HOXC9P31274 SCARNA3-201ENST00000517097 143 ntBASIC2.53□□□□□ -2
HOXC9P31274 AC124303.1-201ENST00000605703 360 ntBASIC2.53□□□□□ -2
HOXC9P31274 AL008636.1-201ENST00000625038 1018 ntBASIC2.53□□□□□ -2
HOXC9P31274 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms