Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
COL6A1P12109 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A1P12109 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A1P12109 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A1P12109 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL6A1P12109 Y_RNA.29-201ENST00000362570 113 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 RNU1-70P-201ENST00000362618 164 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 Y_RNA.143-201ENST00000363520 106 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 RNU6-280P-201ENST00000364145 104 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.59□□□□□ -1.83
COL6A1P12109 MIR888-201ENST00000401186 77 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 RNU6-1245P-201ENST00000411130 106 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 RNA5SP31-201ENST00000411144 127 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 AL513477.1-202ENST00000417061 214 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 EIF1AXP1-201ENST00000419267 435 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 AL358453.1-201ENST00000422522 250 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 PRELID3BP1-201ENST00000457142 540 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 RPL23AP14-201ENST00000468281 468 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.59□□□□□ -1.83
COL6A1P12109 RNU6-1338P-201ENST00000516328 91 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 SNORA43.2-201ENST00000516652 128 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 SNORA31.26-201ENST00000517250 137 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 AL137100.2-201ENST00000555786 315 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 LINC00933-203ENST00000559812 219 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 AC136932.1-201ENST00000574771 208 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.59□□□□□ -1.83
COL6A1P12109 AC024153.1-201ENST00000603103 365 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.59□□□□□ -1.83
COL6A1P12109 SCARNA4-201ENST00000629045 128 ntBASIC3.59□□□□□ -1.83
COL6A1P12109 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.59□□□□□ -1.84
COL6A1P12109 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A1P12109 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A1P12109 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A1P12109 RNU6-884P-201ENST00000363889 107 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 Y_RNA.539-201ENST00000384635 107 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 AL603910.2-201ENST00000407268 136 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 MIR548M-201ENST00000408260 86 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 AL358075.3-201ENST00000426289 226 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 AL139132.1-201ENST00000431587 344 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.58□□□□□ -1.84
COL6A1P12109 AC009296.1-201ENST00000443146 155 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 AL353705.4-201ENST00000449661 238 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.58□□□□□ -1.84
COL6A1P12109 RNU6-703P-201ENST00000516946 107 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 NDUFB9P3-201ENST00000521269 501 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 AL391261.3-201ENST00000557194 520 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 AC025281.1-201ENST00000567026 265 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A1P12109 AC010900.2-201ENST00000604508 210 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 AC240442.1-201ENST00000616055 283 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 AC091903.1-201ENST00000624322 454 ntBASIC3.58□□□□□ -1.84
COL6A1P12109 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A1P12109 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL6A1P12109 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.57□□□□□ -1.84
COL6A1P12109 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A1P12109 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.57□□□□□ -1.84
COL6A1P12109 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A1P12109 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A1P12109 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A1P12109 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
COL6A1P12109 Y_RNA.65-201ENST00000362846 100 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 RNY1-201ENST00000364228 113 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A1P12109 RNU6-658P-201ENST00000384606 106 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 Y_RNA.581-201ENST00000391017 97 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.57□□□□□ -1.84
COL6A1P12109 AL445305.1-201ENST00000432577 575 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.57□□□□□ -1.84
COL6A1P12109 MTATP6P7-201ENST00000453315 681 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.57□□□□□ -1.84
COL6A1P12109 RNU6-1012P-201ENST00000516606 109 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 RNU6-1183P-201ENST00000517054 60 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.57□□□□□ -1.84
COL6A1P12109 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.57□□□□□ -1.84
COL6A1P12109 AC138915.1-201ENST00000565427 1685 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 CYCSP39-201ENST00000565821 309 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 AC130289.1-201ENST00000577321 73 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.57□□□□□ -1.84
COL6A1P12109 RMST_6.1-201ENST00000611980 203 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
COL6A1P12109 AL450472.1-202ENST00000637286 180 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 AC241585.2-209ENST00000638217 143 ntBASIC3.57□□□□□ -1.84
COL6A1P12109 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL6A1P12109 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
COL6A1P12109 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A1P12109 AL513302.2-201ENST00000562313 1842 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A1P12109 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
COL6A1P12109 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL6A1P12109 RNU6-1301P-201ENST00000362724 104 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 RNU6-1266P-201ENST00000362794 105 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 SNORD115-32-201ENST00000364079 82 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 Y_RNA.297-201ENST00000364950 91 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 Y_RNA.462-201ENST00000384268 102 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 SNORD58.1-201ENST00000391313 66 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 AL079342.1-201ENST00000401460 267 ntBASIC3.56□□□□□ -1.84
COL6A1P12109 AC104332.2-201ENST00000429959 156 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms