Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNU6-1153P-201ENST00000516760 105 ntBASIC1.88□□□□□ -2.11
HOXC4P09017 RNU6-143P-201ENST00000516942 93 ntBASIC1.88□□□□□ -2.11
HOXC4P09017 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.88□□□□□ -2.11
HOXC4P09017 COPS8P3-201ENST00000526024 482 ntBASIC1.88□□□□□ -2.11
HOXC4P09017 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.88□□□□□ -2.11
HOXC4P09017 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.88□□□□□ -2.11
HOXC4P09017 POLR3GP2-201ENST00000588366 668 ntBASIC1.88□□□□□ -2.11
HOXC4P09017 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.88□□□□□ -2.11
HOXC4P09017 MIR6845-201ENST00000613182 61 ntBASIC1.88□□□□□ -2.11
HOXC4P09017 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.88□□□□□ -2.11
HOXC4P09017 AC138627.2-201ENST00000624202 601 ntBASIC1.88□□□□□ -2.11
HOXC4P09017 AC091932.3-201ENST00000624223 323 ntBASIC1.88□□□□□ -2.11
HOXC4P09017 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.87□□□□□ -2.11
HOXC4P09017 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
HOXC4P09017 Y_RNA.33-201ENST00000362591 102 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 Y_RNA.212-201ENST00000364177 102 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 SNORD116-11-201ENST00000383882 92 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 SNORA46.1-201ENST00000391069 153 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 MIR548F5-201ENST00000408421 86 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.87□□□□□ -2.11
HOXC4P09017 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.87□□□□□ -2.11
HOXC4P09017 AL353621.1-201ENST00000418219 243 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.87□□□□□ -2.11
HOXC4P09017 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.87□□□□□ -2.11
HOXC4P09017 RPS3AP52-201ENST00000435639 297 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.11
HOXC4P09017 RPL23AP7-203ENST00000449021 469 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.87□□□□□ -2.11
HOXC4P09017 AL583843.1-201ENST00000456070 346 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 RNU6-717P-201ENST00000459076 104 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.87□□□□□ -2.11
HOXC4P09017 RNU6-1332P-201ENST00000516666 104 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 RNU6-566P-201ENST00000516790 107 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.87□□□□□ -2.11
HOXC4P09017 RNU6-323P-201ENST00000521915 107 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 AP005639.2-201ENST00000527592 928 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
HOXC4P09017 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.87□□□□□ -2.11
HOXC4P09017 AC005668.1-201ENST00000571142 476 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 MIR5692A1-201ENST00000580523 69 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 AC011494.1-201ENST00000596454 237 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 AL356055.1-201ENST00000602528 446 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 AC123912.5-201ENST00000605470 343 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
HOXC4P09017 AL138726.1-201ENST00000614873 333 ntBASIC1.87□□□□□ -2.11
HOXC4P09017 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
HOXC4P09017 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.86□□□□□ -2.11
HOXC4P09017 MIR301A-201ENST00000385261 86 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 SNORD73A-201ENST00000386062 65 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
HOXC4P09017 SNORD23.1-201ENST00000408212 104 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 MIR548K-201ENST00000408406 116 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 RN7SKP158-201ENST00000410453 326 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 RNU2-63P-201ENST00000410792 194 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 AL356379.1-201ENST00000414105 126 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.86□□□□□ -2.11
HOXC4P09017 PGBD4P6-201ENST00000421501 610 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 MTND4P28-201ENST00000426217 387 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 MTND1P14-201ENST00000427400 950 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.86□□□□□ -2.11
HOXC4P09017 BRK1P2-201ENST00000442875 223 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 Y_RNA.632-201ENST00000459189 102 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 AP001324.2-201ENST00000461163 319 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.86□□□□□ -2.11
HOXC4P09017 AC008526.1-201ENST00000509149 338 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 RNU6-572P-201ENST00000516724 80 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 RNU2-44P-201ENST00000516795 194 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 RNA5SP454-201ENST00000517231 127 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 AP005597.4-201ENST00000526762 229 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 AC025423.5-201ENST00000550230 219 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.86□□□□□ -2.11
HOXC4P09017 MIR3941-201ENST00000582572 103 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 AC016727.1-205ENST00000605437 569 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 AL050343.2-201ENST00000607338 280 ntBASIC1.86□□□□□ -2.11
HOXC4P09017 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.86□□□□□ -2.11
HOXC4P09017 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
HOXC4P09017 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
HOXC4P09017 Y_RNA.135-201ENST00000363439 95 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 Y_RNA.324-201ENST00000365165 102 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 RNU6-166P-201ENST00000384371 107 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 MIR764-201ENST00000390811 85 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 SNORA40.18-201ENST00000391200 128 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 AL445685.2-201ENST00000422551 342 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 RNA5SP233-201ENST00000459153 113 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 AC018437.1-201ENST00000492214 406 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.85□□□□□ -2.11
HOXC4P09017 AC108210.2-201ENST00000503681 201 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 MTND5P5-201ENST00000503764 376 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 AC092436.3-201ENST00000511788 257 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 RNU6-1183P-201ENST00000517054 60 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 SNORA31.19-201ENST00000517079 126 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.85□□□□□ -2.11
HOXC4P09017 AC007375.1-201ENST00000554513 578 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.85□□□□□ -2.11
HOXC4P09017 MIR4790-201ENST00000577799 79 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.85□□□□□ -2.11
HOXC4P09017 AC023043.2-201ENST00000589678 1026 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 AC012493.3-201ENST00000604494 112 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 AL161423.1-201ENST00000613700 262 ntBASIC1.85□□□□□ -2.11
HOXC4P09017 MTND4LP32-201ENST00000636111 270 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms