Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC026371.1-201ENST00000551867 419 ntBASIC2.04□□□□□ -2.08
VIMP08670 ZNF519P2-201ENST00000557032 169 ntBASIC2.04□□□□□ -2.08
VIMP08670 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.04□□□□□ -2.08
VIMP08670 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.04□□□□□ -2.08
VIMP08670 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.04□□□□□ -2.08
VIMP08670 AC025754.2-201ENST00000606491 432 ntBASIC2.04□□□□□ -2.08
VIMP08670 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.04□□□□□ -2.08
VIMP08670 AC008555.8-201ENST00000623602 2168 ntBASIC2.04□□□□□ -2.08
VIMP08670 ZNF702P-202ENST00000434269 1966 ntBASIC2.03□□□□□ -2.08
VIMP08670 SNORD113-7-201ENST00000363762 77 ntBASIC2.03□□□□□ -2.08
VIMP08670 RNU4-12P-201ENST00000365233 139 ntBASIC2.03□□□□□ -2.08
VIMP08670 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
VIMP08670 MIR208B-201ENST00000401172 77 ntBASIC2.03□□□□□ -2.08
VIMP08670 AL512604.1-201ENST00000404812 257 ntBASIC2.03□□□□□ -2.08
VIMP08670 AL357139.1-201ENST00000407792 426 ntBASIC2.03□□□□□ -2.08
VIMP08670 SNORA11-201ENST00000408789 128 ntBASIC2.03□□□□□ -2.08
VIMP08670 RNA5SP489-201ENST00000410986 109 ntBASIC2.03□□□□□ -2.08
VIMP08670 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
VIMP08670 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.03□□□□□ -2.08
VIMP08670 AC012306.1-201ENST00000423267 114 ntBASIC2.03□□□□□ -2.08
VIMP08670 AC027124.2-201ENST00000428249 105 ntBASIC2.03□□□□□ -2.08
VIMP08670 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.03□□□□□ -2.08
VIMP08670 HMGN2P3-201ENST00000433603 273 ntBASIC2.03□□□□□ -2.08
VIMP08670 HMGN2P5-201ENST00000436882 273 ntBASIC2.03□□□□□ -2.08
VIMP08670 HMGN2P18-201ENST00000450680 270 ntBASIC2.03□□□□□ -2.08
VIMP08670 AC091435.1-201ENST00000505442 584 ntBASIC2.03□□□□□ -2.08
VIMP08670 RNA5SP281-201ENST00000516504 135 ntBASIC2.03□□□□□ -2.08
VIMP08670 RNA5SP490-201ENST00000517141 136 ntBASIC2.03□□□□□ -2.08
VIMP08670 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.03□□□□□ -2.08
VIMP08670 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.03□□□□□ -2.08
VIMP08670 EIF4A1P12-201ENST00000551910 141 ntBASIC2.03□□□□□ -2.08
VIMP08670 SNRPGP18-201ENST00000553000 214 ntBASIC2.03□□□□□ -2.08
VIMP08670 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.03□□□□□ -2.08
VIMP08670 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.03□□□□□ -2.08
VIMP08670 MIR6873-201ENST00000622788 63 ntBASIC2.03□□□□□ -2.08
VIMP08670 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.03□□□□□ -2.08
VIMP08670 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.03□□□□□ -2.08
VIMP08670 AL136360.1-201ENST00000503377 1900 ntBASIC2.02□□□□□ -2.09
VIMP08670 Y_RNA.99-201ENST00000363138 105 ntBASIC2.02□□□□□ -2.09
VIMP08670 Y_RNA.123-201ENST00000363338 102 ntBASIC2.02□□□□□ -2.09
VIMP08670 Y_RNA.450-201ENST00000384198 113 ntBASIC2.02□□□□□ -2.09
VIMP08670 VN1R36P-201ENST00000414936 291 ntBASIC2.02□□□□□ -2.09
VIMP08670 EIF1AXP1-201ENST00000419267 435 ntBASIC2.02□□□□□ -2.09
VIMP08670 SNRPEP10-201ENST00000420249 274 ntBASIC2.02□□□□□ -2.09
VIMP08670 USP9YP28-201ENST00000435142 589 ntBASIC2.02□□□□□ -2.09
VIMP08670 MTCO1P29-201ENST00000496868 288 ntBASIC2.02□□□□□ -2.09
VIMP08670 AC114801.2-201ENST00000503825 781 ntBASIC2.02□□□□□ -2.09
VIMP08670 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.02□□□□□ -2.09
VIMP08670 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.02□□□□□ -2.09
VIMP08670 AP005660.1-201ENST00000522972 293 ntBASIC2.02□□□□□ -2.09
VIMP08670 CPDP1-201ENST00000579660 283 ntBASIC2.02□□□□□ -2.09
VIMP08670 MIR3162-201ENST00000581818 82 ntBASIC2.02□□□□□ -2.09
VIMP08670 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.02□□□□□ -2.09
VIMP08670 AL033523.1-201ENST00000605153 153 ntBASIC2.02□□□□□ -2.09
VIMP08670 AC005520.5-201ENST00000613926 164 ntBASIC2.02□□□□□ -2.09
VIMP08670 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.02□□□□□ -2.09
VIMP08670 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
VIMP08670 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.02□□□□□ -2.09
VIMP08670 MIR521-1-201ENST00000384902 87 ntBASIC2.01□□□□□ -2.09
VIMP08670 MIR597-201ENST00000384968 97 ntBASIC2.01□□□□□ -2.09
VIMP08670 RNU11-3P-201ENST00000391111 133 ntBASIC2.01□□□□□ -2.09
VIMP08670 RNU2-41P-201ENST00000410991 178 ntBASIC2.01□□□□□ -2.09
VIMP08670 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.01□□□□□ -2.09
VIMP08670 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.01□□□□□ -2.09
VIMP08670 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.01□□□□□ -2.09
VIMP08670 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.01□□□□□ -2.09
VIMP08670 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.01□□□□□ -2.09
VIMP08670 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.01□□□□□ -2.09
VIMP08670 snoU13.6-201ENST00000458785 104 ntBASIC2.01□□□□□ -2.09
VIMP08670 RNU7-66P-201ENST00000459469 62 ntBASIC2.01□□□□□ -2.09
VIMP08670 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.01□□□□□ -2.09
VIMP08670 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.01□□□□□ -2.09
VIMP08670 MIR3122-201ENST00000577243 73 ntBASIC2.01□□□□□ -2.09
VIMP08670 AC009994.1-201ENST00000606889 253 ntBASIC2.01□□□□□ -2.09
VIMP08670 AC005296.1-201ENST00000616145 209 ntBASIC2.01□□□□□ -2.09
VIMP08670 U4.5-201ENST00000617137 123 ntBASIC2.01□□□□□ -2.09
VIMP08670 AL136221.1-201ENST00000621449 509 ntBASIC2.01□□□□□ -2.09
VIMP08670 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2□□□□□ -2.09
VIMP08670 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
VIMP08670 RNU1-58P-201ENST00000362413 163 ntBASIC2□□□□□ -2.09
VIMP08670 Y_RNA.89-201ENST00000363031 102 ntBASIC2□□□□□ -2.09
VIMP08670 RNU6-128P-201ENST00000383976 107 ntBASIC2□□□□□ -2.09
VIMP08670 SNORA29-201ENST00000384183 140 ntBASIC2□□□□□ -2.09
VIMP08670 Y_RNA.530-201ENST00000384587 101 ntBASIC2□□□□□ -2.09
VIMP08670 RNA5SP465-201ENST00000391195 109 ntBASIC2□□□□□ -2.09
VIMP08670 AL356320.1-201ENST00000429616 163 ntBASIC2□□□□□ -2.09
VIMP08670 RPL23AP3-201ENST00000453844 468 ntBASIC2□□□□□ -2.09
VIMP08670 RNU7-187P-201ENST00000458985 68 ntBASIC2□□□□□ -2.09
VIMP08670 AC007547.1-201ENST00000462177 490 ntBASIC2□□□□□ -2.09
VIMP08670 AC096745.1-201ENST00000509945 370 ntBASIC2□□□□□ -2.09
VIMP08670 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2□□□□□ -2.09
VIMP08670 FAM206BP-201ENST00000510179 541 ntBASIC2□□□□□ -2.09
VIMP08670 ATP5EP1-201ENST00000510257 156 ntBASIC2□□□□□ -2.09
VIMP08670 AC005741.1-201ENST00000511094 432 ntBASIC2□□□□□ -2.09
VIMP08670 IGHVII-53-1-201ENST00000519538 255 ntBASIC2□□□□□ -2.09
VIMP08670 MRPS36P4-201ENST00000534436 298 ntBASIC2□□□□□ -2.09
VIMP08670 AC016256.1-201ENST00000547971 354 ntBASIC2□□□□□ -2.09
VIMP08670 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2□□□□□ -2.09
VIMP08670 AC146944.4-201ENST00000602697 718 ntBASIC2□□□□□ -2.09
VIMP08670 AC005034.5-201ENST00000604219 466 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 146.6 ms