Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.24□□□□□ -1.89
HLA-DOAP06340 SCARNA4-202ENST00000625402 129 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 MTND5P6-201ENST00000422338 1798 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.24□□□□□ -1.89
HLA-DOAP06340 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HLA-DOAP06340 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.24□□□□□ -1.89
HLA-DOAP06340 AC009541.1-201ENST00000438279 2662 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
HLA-DOAP06340 RNU6-611P-201ENST00000384276 104 ntBASIC3.23□□□□□ -1.89
HLA-DOAP06340 SNORD116-20-201ENST00000384529 92 ntBASIC3.23□□□□□ -1.89
HLA-DOAP06340 Y_RNA.526-201ENST00000384572 110 ntBASIC3.23□□□□□ -1.89
HLA-DOAP06340 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
HLA-DOAP06340 SNORA48.8-201ENST00000391324 134 ntBASIC3.23□□□□□ -1.89
HLA-DOAP06340 AC009310.1-201ENST00000414414 451 ntBASIC3.23□□□□□ -1.89
HLA-DOAP06340 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.23□□□□□ -1.89
HLA-DOAP06340 RN7SKP210-201ENST00000459176 261 ntBASIC3.23□□□□□ -1.89
HLA-DOAP06340 AC003982.1-202ENST00000469928 248 ntBASIC3.23□□□□□ -1.89
HLA-DOAP06340 HMGB1P35-201ENST00000503360 598 ntBASIC3.23□□□□□ -1.89
HLA-DOAP06340 RNU6-911P-201ENST00000516523 104 ntBASIC3.23□□□□□ -1.89
HLA-DOAP06340 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.23□□□□□ -1.89
HLA-DOAP06340 AC104581.2-201ENST00000572227 430 ntBASIC3.23□□□□□ -1.89
HLA-DOAP06340 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.23□□□□□ -1.89
HLA-DOAP06340 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.23□□□□□ -1.89
HLA-DOAP06340 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
HLA-DOAP06340 AL353746.1-201ENST00000566293 6881 ntBASIC3.23□□□□□ -1.89
HLA-DOAP06340 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HLA-DOAP06340 RNU1-76P-201ENST00000362903 159 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 SNORD56.1-201ENST00000362913 68 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 snoU2_19.2-201ENST00000363024 80 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 Y_RNA.143-201ENST00000363520 106 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 Y_RNA.183-201ENST00000363882 113 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 RNU1-100P-201ENST00000365255 165 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 RNU6-1093P-201ENST00000391194 107 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 BTF3L4P2-201ENST00000392798 346 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 FTH1P15-201ENST00000406984 280 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 AP000275.1-201ENST00000411943 390 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.22□□□□□ -1.89
HLA-DOAP06340 AL590664.1-201ENST00000448065 339 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 SNRPGP7-201ENST00000469016 106 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.22□□□□□ -1.89
HLA-DOAP06340 TRBVB-201ENST00000477100 408 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 RPL30P14-201ENST00000482744 348 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 RPL23AP75-201ENST00000491601 451 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 AF186996.7-201ENST00000492781 209 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 AC067942.3-201ENST00000512025 362 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 AC096725.1-201ENST00000514266 313 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 AL442163.3-201ENST00000554110 156 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.22□□□□□ -1.89
HLA-DOAP06340 RPL23AP78-201ENST00000599928 470 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.22□□□□□ -1.89
HLA-DOAP06340 AP001282.2-201ENST00000616149 309 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 AC002076.2-201ENST00000617362 122 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 MIR6134-201ENST00000617606 109 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 SDR42E1P4-201ENST00000620894 481 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 IGHVIII-44-202ENST00000636235 289 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HLA-DOAP06340 AP003122.5-201ENST00000527668 3766 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
HLA-DOAP06340 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
HLA-DOAP06340 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HLA-DOAP06340 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.22□□□□□ -1.89
HLA-DOAP06340 AC233981.2-201ENST00000611524 1614 ntBASIC3.22□□□□□ -1.89
HLA-DOAP06340 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DOAP06340 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DOAP06340 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DOAP06340 RNU6-858P-201ENST00000362436 107 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 Y_RNA.27-201ENST00000362540 103 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 Y_RNA.84-201ENST00000363011 104 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 SNORA1.3-201ENST00000384676 136 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 Y_RNA.562-201ENST00000384695 113 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 NDUFS5P4-201ENST00000412983 318 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.21□□□□□ -1.9
HLA-DOAP06340 AL451074.5-201ENST00000415894 435 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 BPY2DP-201ENST00000422208 265 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.21□□□□□ -1.9
HLA-DOAP06340 AL445305.1-201ENST00000432577 575 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.21□□□□□ -1.9
HLA-DOAP06340 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.21□□□□□ -1.9
HLA-DOAP06340 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DOAP06340 AL513124.1-201ENST00000450410 614 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 SSXP4-201ENST00000451349 245 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 AC010099.1-201ENST00000455434 375 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 RPS27P29-201ENST00000463110 252 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 SNRPGP3-201ENST00000469405 227 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.21□□□□□ -1.9
HLA-DOAP06340 AP004217.1-201ENST00000480579 346 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.21□□□□□ -1.9
HLA-DOAP06340 AC025465.3-201ENST00000510570 311 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 RNU7-175P-201ENST00000515915 61 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 Y_RNA.706-201ENST00000516933 99 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 AP004607.1-201ENST00000524456 203 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 AP000867.2-201ENST00000532468 320 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.21□□□□□ -1.9
HLA-DOAP06340 AC010186.2-204ENST00000537668 439 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.21□□□□□ -1.9
HLA-DOAP06340 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.21□□□□□ -1.9
HLA-DOAP06340 AC023824.2-201ENST00000566185 400 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 MIR6076-201ENST00000617521 113 ntBASIC3.21□□□□□ -1.9
HLA-DOAP06340 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms