Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNU6-389P-201ENST00000517048 105 ntBASIC2.59□□□□□ -1.99
LDB3O75112 AP005902.1-201ENST00000521358 186 ntBASIC2.59□□□□□ -1.99
LDB3O75112 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.59□□□□□ -1.99
LDB3O75112 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
LDB3O75112 AC004584.2-201ENST00000570407 410 ntBASIC2.59□□□□□ -1.99
LDB3O75112 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.59□□□□□ -1.99
LDB3O75112 AC011471.1-201ENST00000585766 187 ntBASIC2.59□□□□□ -1.99
LDB3O75112 AC125232.2-201ENST00000592457 143 ntBASIC2.59□□□□□ -1.99
LDB3O75112 AC009318.2-201ENST00000610917 651 ntBASIC2.59□□□□□ -1.99
LDB3O75112 MIR8062-201ENST00000621515 85 ntBASIC2.59□□□□□ -1.99
LDB3O75112 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.59□□□□□ -1.99
LDB3O75112 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.59□□□□□ -2
LDB3O75112 MTND5P9-201ENST00000503854 1755 ntBASIC2.59□□□□□ -2
LDB3O75112 AP000560.1-201ENST00000624150 1937 ntBASIC2.58□□□□□ -2
LDB3O75112 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.58□□□□□ -2
LDB3O75112 MIR26A1-201ENST00000362205 77 ntBASIC2.58□□□□□ -2
LDB3O75112 RNU6-858P-201ENST00000362436 107 ntBASIC2.58□□□□□ -2
LDB3O75112 RNU6-527P-201ENST00000363425 104 ntBASIC2.58□□□□□ -2
LDB3O75112 SNORA80A-201ENST00000363922 136 ntBASIC2.58□□□□□ -2
LDB3O75112 RNU6-595P-201ENST00000363944 107 ntBASIC2.58□□□□□ -2
LDB3O75112 SNORD116-20-201ENST00000384529 92 ntBASIC2.58□□□□□ -2
LDB3O75112 AL138827.1-201ENST00000402666 306 ntBASIC2.58□□□□□ -2
LDB3O75112 NDUFB4P4-201ENST00000404822 243 ntBASIC2.58□□□□□ -2
LDB3O75112 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.58□□□□□ -2
LDB3O75112 USP9YP16-201ENST00000430287 407 ntBASIC2.58□□□□□ -2
LDB3O75112 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.58□□□□□ -2
LDB3O75112 AC105272.1-201ENST00000438604 198 ntBASIC2.58□□□□□ -2
LDB3O75112 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.58□□□□□ -2
LDB3O75112 AC124916.1-201ENST00000444020 547 ntBASIC2.58□□□□□ -2
LDB3O75112 USP9YP23-201ENST00000455085 407 ntBASIC2.58□□□□□ -2
LDB3O75112 AC104564.1-201ENST00000493028 407 ntBASIC2.58□□□□□ -2
LDB3O75112 AC107222.1-201ENST00000510899 637 ntBASIC2.58□□□□□ -2
LDB3O75112 SNORA40.14-201ENST00000516543 86 ntBASIC2.58□□□□□ -2
LDB3O75112 RNU6-612P-201ENST00000516909 102 ntBASIC2.58□□□□□ -2
LDB3O75112 ACA59.2-201ENST00000517061 156 ntBASIC2.58□□□□□ -2
LDB3O75112 AC023157.2-201ENST00000540596 141 ntBASIC2.58□□□□□ -2
LDB3O75112 AC078899.3-201ENST00000599065 212 ntBASIC2.58□□□□□ -2
LDB3O75112 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.58□□□□□ -2
LDB3O75112 Z98751.3-201ENST00000604447 521 ntBASIC2.58□□□□□ -2
LDB3O75112 MIR7106-201ENST00000612419 65 ntBASIC2.58□□□□□ -2
LDB3O75112 AC097372.5-201ENST00000623665 376 ntBASIC2.58□□□□□ -2
LDB3O75112 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.58□□□□□ -2
LDB3O75112 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.57□□□□□ -2
LDB3O75112 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
LDB3O75112 AC010889.1-201ENST00000566193 2666 ntBASIC2.57□□□□□ -2
LDB3O75112 ZNF299P-201ENST00000406845 1804 ntBASIC2.57□□□□□ -2
LDB3O75112 Y_RNA.380-201ENST00000365663 111 ntBASIC2.57□□□□□ -2
LDB3O75112 AL512633.1-201ENST00000399931 655 ntBASIC2.57□□□□□ -2
LDB3O75112 RPS29P13-201ENST00000402041 169 ntBASIC2.57□□□□□ -2
LDB3O75112 RNU6-121P-201ENST00000410525 99 ntBASIC2.57□□□□□ -2
LDB3O75112 ARL5AP4-201ENST00000430731 512 ntBASIC2.57□□□□□ -2
LDB3O75112 AL591043.1-201ENST00000432461 424 ntBASIC2.57□□□□□ -2
LDB3O75112 AC009296.1-201ENST00000443146 155 ntBASIC2.57□□□□□ -2
LDB3O75112 OSTCP8-201ENST00000445117 448 ntBASIC2.57□□□□□ -2
LDB3O75112 Z96811.1-201ENST00000445880 108 ntBASIC2.57□□□□□ -2
LDB3O75112 U8.22-201ENST00000459141 133 ntBASIC2.57□□□□□ -2
LDB3O75112 U8.21-201ENST00000459536 136 ntBASIC2.57□□□□□ -2
LDB3O75112 RPL23AP49-201ENST00000492925 468 ntBASIC2.57□□□□□ -2
LDB3O75112 SNORA9.3-201ENST00000516383 129 ntBASIC2.57□□□□□ -2
LDB3O75112 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.57□□□□□ -2
LDB3O75112 GTF3AP2-201ENST00000557014 266 ntBASIC2.57□□□□□ -2
LDB3O75112 AC009163.5-201ENST00000575421 637 ntBASIC2.57□□□□□ -2
LDB3O75112 MIR3605-201ENST00000583214 100 ntBASIC2.57□□□□□ -2
LDB3O75112 AC091152.3-201ENST00000604227 325 ntBASIC2.57□□□□□ -2
LDB3O75112 AC062037.2-201ENST00000610137 73 ntBASIC2.57□□□□□ -2
LDB3O75112 MIR8076-201ENST00000611401 83 ntBASIC2.57□□□□□ -2
LDB3O75112 AC078938.1-201ENST00000620993 318 ntBASIC2.57□□□□□ -2
LDB3O75112 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.57□□□□□ -2
LDB3O75112 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
LDB3O75112 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.57□□□□□ -2
LDB3O75112 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.57□□□□□ -2
LDB3O75112 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.57□□□□□ -2
LDB3O75112 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
LDB3O75112 RNU6-105P-201ENST00000363909 104 ntBASIC2.56□□□□□ -2
LDB3O75112 Y_RNA.376-201ENST00000365638 108 ntBASIC2.56□□□□□ -2
LDB3O75112 Y_RNA.447-201ENST00000384184 113 ntBASIC2.56□□□□□ -2
LDB3O75112 SNORA51.11-201ENST00000384442 131 ntBASIC2.56□□□□□ -2
LDB3O75112 RNU6-19P-201ENST00000384718 107 ntBASIC2.56□□□□□ -2
LDB3O75112 Y_RNA.618-201ENST00000410949 107 ntBASIC2.56□□□□□ -2
LDB3O75112 AL513477.1-202ENST00000417061 214 ntBASIC2.56□□□□□ -2
LDB3O75112 AC074117.2-201ENST00000417130 397 ntBASIC2.56□□□□□ -2
LDB3O75112 PTGES3P4-201ENST00000426243 356 ntBASIC2.56□□□□□ -2
LDB3O75112 Z82188.1-201ENST00000436709 154 ntBASIC2.56□□□□□ -2
LDB3O75112 AC073910.1-201ENST00000445047 438 ntBASIC2.56□□□□□ -2
LDB3O75112 AC012308.1-201ENST00000451232 178 ntBASIC2.56□□□□□ -2
LDB3O75112 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.56□□□□□ -2
LDB3O75112 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.56□□□□□ -2
LDB3O75112 MTCO3P8-201ENST00000453691 755 ntBASIC2.56□□□□□ -2
LDB3O75112 MED28P2-201ENST00000475771 317 ntBASIC2.56□□□□□ -2
LDB3O75112 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.56□□□□□ -2
LDB3O75112 AC109329.1-201ENST00000518744 317 ntBASIC2.56□□□□□ -2
LDB3O75112 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.56□□□□□ -2
LDB3O75112 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.56□□□□□ -2
LDB3O75112 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
LDB3O75112 AL137843.1-201ENST00000605078 385 ntBASIC2.56□□□□□ -2
LDB3O75112 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.56□□□□□ -2
LDB3O75112 MIR3529-201ENST00000637713 78 ntBASIC2.56□□□□□ -2
LDB3O75112 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
LDB3O75112 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.56□□□□□ -2
LDB3O75112 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms