Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 AC096644.4-201ENST00000563417 2912 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 RBBP8P1-201ENST00000449447 1844 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 Y_RNA.80-201ENST00000362996 102 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 RNU6-463P-201ENST00000384340 107 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 Y_RNA.485-201ENST00000384395 102 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 Y_RNA.527-201ENST00000384573 102 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 MIR147B-201ENST00000390185 80 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 BTF3L4P2-201ENST00000392798 346 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 ARL5AP4-201ENST00000430731 512 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AC244505.4-201ENST00000434905 287 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 IPO7P1-201ENST00000442031 636 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 SSXP5-201ENST00000443473 287 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 IFNA11P-201ENST00000446352 526 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AC117440.1-201ENST00000474107 571 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AP001025.1-201ENST00000486139 332 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AC006483.1-201ENST00000487308 313 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AC068781.1-201ENST00000488231 618 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AC108210.2-201ENST00000503681 201 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AC092447.9-201ENST00000603395 144 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AL162373.1-201ENST00000620433 407 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AL078596.1-201ENST00000624856 447 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AC110079.1-202ENST00000635213 138 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AC103988.1-201ENST00000566382 2177 ntBASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.29□□□□□ -1.88
NR2E3Q9Y5X4 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 MAPK10-266ENST00000641066 6555 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 AC110774.1-201ENST00000623567 2018 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 Y_RNA.153-201ENST00000363615 91 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 U3.6-201ENST00000363622 211 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 CD24P4-201ENST00000382840 243 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 RNU6-1027P-201ENST00000383998 107 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 RNU6-622P-201ENST00000384272 103 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 RN7SKP192-201ENST00000411291 327 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 EIF4EP2-201ENST00000422816 654 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 AL603825.1-201ENST00000438481 80 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 OSTCP8-201ENST00000445117 448 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 MTATP8P1-201ENST00000467115 207 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 GZMAP1-201ENST00000503054 631 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 RNU6-764P-201ENST00000516396 105 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 SNORD116.3-201ENST00000517176 78 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 MIR4273-201ENST00000582824 84 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 AC004832.5-201ENST00000608677 401 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 AC138305.3-201ENST00000624988 240 ntBASIC3.28□□□□□ -1.88
NR2E3Q9Y5X4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.28□□□□□ -1.89
NR2E3Q9Y5X4 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 RNU6-859P-201ENST00000362728 107 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 RNU6-26P-201ENST00000383985 107 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 Y_RNA.428-201ENST00000384078 102 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 AL353997.1-201ENST00000432936 108 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 RPL17P19-201ENST00000489069 552 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 AC105758.1-201ENST00000506038 399 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 MIR5696-201ENST00000578474 85 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 MIR5701-3-201ENST00000578890 82 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 AC090897.2-201ENST00000581715 130 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 MIR5701-1-201ENST00000585138 82 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 MIR5701-2-201ENST00000615634 82 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 AC091812.1-201ENST00000432235 1948 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 AL355596.1-201ENST00000565399 3996 ntBASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
NR2E3Q9Y5X4 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 ZNF658B-202ENST00000615961 3375 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 SNORD50.1-201ENST00000362987 71 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 RNU6-99P-201ENST00000364721 107 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 RNU6-784P-201ENST00000384330 106 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 Y_RNA.533-201ENST00000384596 114 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 AL358075.3-201ENST00000426289 226 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 AC009414.1-201ENST00000427200 443 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 AC004383.1-201ENST00000438135 289 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 AC112492.4-201ENST00000456549 352 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 U8.20-201ENST00000459445 131 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 RNU6-548P-201ENST00000517083 115 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 COX6CP5-201ENST00000527162 228 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 AC113195.1-201ENST00000579952 141 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 MIR4503-201ENST00000582187 83 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 AC078899.3-201ENST00000599065 212 ntBASIC3.26□□□□□ -1.89
NR2E3Q9Y5X4 uc_338.14-201ENST00000613162 166 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 152.3 ms