Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 MRPS18CP6-201ENST00000423587 223 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 AC244670.1-201ENST00000436879 112 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 AL109933.2-201ENST00000452651 260 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 snoU13.14-201ENST00000459372 104 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 AP001324.2-201ENST00000461163 319 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 RPL23AP75-201ENST00000491601 451 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 RNU7-4P-201ENST00000516961 62 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 MIR3605-201ENST00000583214 100 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 AL133393.1-201ENST00000603277 287 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 AC005034.5-201ENST00000604219 466 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 RPL23AP88-201ENST00000605759 454 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 PART1_1.1-201ENST00000611761 217 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 UCA1.1-201ENST00000620952 75 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 SCARNA4-201ENST00000629045 128 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 FAM35CP-201ENST00000554755 2470 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 RNU5B-2P-201ENST00000363036 113 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 SNORA29-201ENST00000384183 140 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AL031121.1-201ENST00000406553 254 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 RNA5SP494-201ENST00000410653 129 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AC007098.1-201ENST00000420122 367 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AL358453.1-201ENST00000422522 250 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AC112220.1-201ENST00000434628 355 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AC090525.1-201ENST00000479116 478 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 RPL30P1-201ENST00000488676 339 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 RNU7-175P-201ENST00000515915 61 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 RNA5SP380-201ENST00000517190 98 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AC079598.5-201ENST00000547460 117 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AC004584.2-201ENST00000570407 410 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AC006157.1-201ENST00000611750 366 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AC040896.1-201ENST00000613819 479 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AC002064.3-201ENST00000623448 346 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 AL450472.1-202ENST00000637286 180 ntBASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.12□□□□□ -1.91
PCDHA1Q9Y5I3 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AC099654.7-201ENST00000635788 2127 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AL136360.1-201ENST00000503377 1900 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-639P-201ENST00000384074 107 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.504-201ENST00000384481 104 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-1160P-201ENST00000384546 104 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 MIR606-201ENST00000384851 96 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 MIR625-201ENST00000385047 85 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 SNORA12.2-201ENST00000391040 156 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-1140P-201ENST00000410517 106 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AL353705.4-201ENST00000449661 238 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 GSTA11P-201ENST00000452866 669 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 snoU13.30-201ENST00000458951 104 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AC105758.1-201ENST00000506038 399 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 RAC1P5-201ENST00000512182 576 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-475P-201ENST00000516073 104 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 SCARNA11.3-201ENST00000517276 130 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 GNAI2P1-201ENST00000541815 315 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AC007375.1-201ENST00000554513 578 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AC021231.3-201ENST00000558497 370 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AC092447.9-201ENST00000603395 144 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AL355802.3-201ENST00000607571 545 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AC004832.5-201ENST00000608677 401 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 AC007485.1-201ENST00000616755 206 ntBASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PCDHA1Q9Y5I3 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-859P-201ENST00000362728 107 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.80-201ENST00000362996 102 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-529P-201ENST00000363383 104 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.158-201ENST00000363651 101 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 SNORD115-32-201ENST00000364079 82 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.314-201ENST00000365114 102 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-738P-201ENST00000384531 106 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 MIR196B-201ENST00000384852 84 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 snosnR66.1-201ENST00000391095 99 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 MRPL42P3-201ENST00000401492 326 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 AL356057.3-201ENST00000402607 340 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 AC138623.1-201ENST00000418060 216 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 ARL5AP4-201ENST00000430731 512 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 GPM6BP3-201ENST00000442797 145 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 RPL31P41-201ENST00000477967 372 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 SNORA31.6-201ENST00000516241 130 ntBASIC3.1□□□□□ -1.91
PCDHA1Q9Y5I3 SNORA9.3-201ENST00000516383 129 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms