Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNU6-623P-201ENST00000363143 105 ntBASIC1.86□□□□□ -2.11
FOXA2Q9Y261 Y_RNA.373-201ENST00000365600 103 ntBASIC1.86□□□□□ -2.11
FOXA2Q9Y261 MIR450B-201ENST00000401182 78 ntBASIC1.86□□□□□ -2.11
FOXA2Q9Y261 USP9YP27-201ENST00000418455 438 ntBASIC1.86□□□□□ -2.11
FOXA2Q9Y261 AL139413.1-201ENST00000421309 217 ntBASIC1.86□□□□□ -2.11
FOXA2Q9Y261 FTH1P25-201ENST00000447665 469 ntBASIC1.86□□□□□ -2.11
FOXA2Q9Y261 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA2Q9Y261 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA2Q9Y261 MIR5007-201ENST00000583098 95 ntBASIC1.86□□□□□ -2.11
FOXA2Q9Y261 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.86□□□□□ -2.11
FOXA2Q9Y261 IGHVIII-44-202ENST00000636235 289 ntBASIC1.86□□□□□ -2.11
FOXA2Q9Y261 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.86□□□□□ -2.11
FOXA2Q9Y261 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.86□□□□□ -2.11
FOXA2Q9Y261 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
FOXA2Q9Y261 AL359851.1-201ENST00000569460 4997 ntBASIC1.86□□□□□ -2.11
FOXA2Q9Y261 AC005336.3-201ENST00000623833 2679 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 Y_RNA.41-201ENST00000362646 102 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AC244636.1-201ENST00000421152 228 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 MTND3P21-201ENST00000433774 331 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 RPS15AP28-201ENST00000435088 386 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 RPS29P27-201ENST00000463711 170 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AC107222.1-201ENST00000510899 637 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AC092436.3-201ENST00000511788 257 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AC010486.1-201ENST00000511793 424 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 MRPS17P9-201ENST00000511924 393 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AK6P1-201ENST00000540219 478 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AC064807.4-201ENST00000607201 407 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AC087241.4-201ENST00000612441 480 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AL773524.1-201ENST00000614065 229 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 MIR6766-201ENST00000622641 72 ntBASIC1.85□□□□□ -2.11
FOXA2Q9Y261 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA2Q9Y261 RNU4-82P-201ENST00000362443 140 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 Y_RNA.123-201ENST00000363338 102 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 Y_RNA.167-201ENST00000363735 109 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 RNU6-522P-201ENST00000364497 107 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 RNU6-1026P-201ENST00000384465 108 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
FOXA2Q9Y261 RNU6-1093P-201ENST00000391194 107 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AL356432.1-201ENST00000405809 419 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 RNU2-41P-201ENST00000410991 178 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA2Q9Y261 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
FOXA2Q9Y261 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA2Q9Y261 SNORA59A-201ENST00000459326 152 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 RNU7-14P-201ENST00000459331 62 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.84□□□□□ -2.11
FOXA2Q9Y261 MTCO1P29-201ENST00000496868 288 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AP002770.2-201ENST00000543613 532 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AC016256.1-201ENST00000547971 354 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AC026371.1-201ENST00000551867 419 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AC100830.2-201ENST00000581636 240 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.84□□□□□ -2.11
FOXA2Q9Y261 MIR4435-1-201ENST00000582552 80 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 BNIP3P25-201ENST00000596023 559 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AC008749.1-201ENST00000597650 306 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AL109918.3-201ENST00000603072 338 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AF250324.2-201ENST00000608299 610 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AC005520.5-201ENST00000613926 164 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 AC005296.1-201ENST00000616145 209 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 MIR1321-201ENST00000637766 79 ntBASIC1.84□□□□□ -2.11
FOXA2Q9Y261 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.12
FOXA2Q9Y261 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.84□□□□□ -2.12
FOXA2Q9Y261 LINC02555-201ENST00000563933 1951 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
FOXA2Q9Y261 MIR449A-201ENST00000362113 91 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 Y_RNA.332-201ENST00000365271 113 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 MIR521-1-201ENST00000384902 87 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
FOXA2Q9Y261 RNA5SP212-201ENST00000391223 107 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 RNU6-908P-201ENST00000410160 94 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 RNU6-325P-201ENST00000411132 105 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 MTND1P23-201ENST00000416931 372 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 AC009963.1-201ENST00000417265 157 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 MTCO1P20-201ENST00000425366 358 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.83□□□□□ -2.12
FOXA2Q9Y261 NDUFA5P4-201ENST00000436704 385 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.83□□□□□ -2.12
FOXA2Q9Y261 snoU13.6-201ENST00000458785 104 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 RPL23AP42-201ENST00000471152 471 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 ATP5EP1-201ENST00000510257 156 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.83□□□□□ -2.12
FOXA2Q9Y261 AC146944.4-201ENST00000602697 718 ntBASIC1.83□□□□□ -2.12
FOXA2Q9Y261 RPL17P51-201ENST00000605218 238 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms