Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
VPS28Q9UK41 SNORA6-201ENST00000384033 151 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 SNORD14D-201ENST00000384390 87 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 MIR518A2-201ENST00000384966 87 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
VPS28Q9UK41 SNORA3.2-201ENST00000408221 125 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 RNU6-325P-201ENST00000411132 105 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 AL030996.1-201ENST00000411430 235 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 AL135786.1-201ENST00000415892 214 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS28Q9UK41 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 IPO7P1-201ENST00000442031 636 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 AC007547.1-201ENST00000462177 490 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 ANXA2P1-201ENST00000505539 926 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 PTP4A1P4-201ENST00000512479 322 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.35□□□□□ -2.03
VPS28Q9UK41 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS28Q9UK41 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS28Q9UK41 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.35□□□□□ -2.03
VPS28Q9UK41 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
VPS28Q9UK41 SNORA16B-201ENST00000364674 135 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 RNU6-534P-201ENST00000364877 106 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 Y_RNA.295-201ENST00000364918 102 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 SNORA36A-201ENST00000384221 132 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 AL355497.1-201ENST00000406262 551 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 AL357139.1-201ENST00000407792 426 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 MIR1262-201ENST00000408276 93 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 RNA5SP118-201ENST00000410385 109 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 RN7SKP284-201ENST00000411002 343 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 ZNF885P-201ENST00000420174 1098 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.34□□□□□ -2.03
VPS28Q9UK41 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS28Q9UK41 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS28Q9UK41 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS28Q9UK41 HSPE1P18-201ENST00000517602 280 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 IGLV3-17-201ENST00000519099 244 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS28Q9UK41 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.34□□□□□ -2.03
VPS28Q9UK41 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.34□□□□□ -2.03
VPS28Q9UK41 PCGEM1.1-201ENST00000613431 131 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 AC090517.2-201ENST00000614966 680 ntBASIC2.34□□□□□ -2.03
VPS28Q9UK41 ZNF720P1-201ENST00000562403 1939 ntBASIC2.34□□□□□ -2.04
VPS28Q9UK41 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
VPS28Q9UK41 RNU6-1252P-201ENST00000363054 104 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 SNORD115-3-201ENST00000363100 82 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 RNU6-26P-201ENST00000383985 107 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 Y_RNA.453-201ENST00000384223 109 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS28Q9UK41 VN1R36P-201ENST00000414936 291 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 Z98742.3-201ENST00000418637 326 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 AC012306.1-201ENST00000423267 114 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 AL356320.1-201ENST00000429616 163 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
VPS28Q9UK41 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS28Q9UK41 RNU7-66P-201ENST00000459469 62 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 RN7SL429P-201ENST00000479090 223 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 RN7SL489P-201ENST00000486185 223 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 RN7SL327P-201ENST00000488659 223 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 AC021146.2-201ENST00000504736 556 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 AC093259.1-201ENST00000509755 300 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 AC096745.1-201ENST00000509945 370 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 FAM206BP-201ENST00000510179 541 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.33□□□□□ -2.04
VPS28Q9UK41 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS28Q9UK41 AC109446.1-201ENST00000566172 220 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 AC005520.5-201ENST00000613926 164 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 RN7SL853P-201ENST00000617250 223 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 MIR3688-2-201ENST00000636963 87 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 ZNF658B-202ENST00000615961 3375 ntBASIC2.33□□□□□ -2.04
VPS28Q9UK41 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
VPS28Q9UK41 AC080100.1-201ENST00000624239 5356 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 Y_RNA.99-201ENST00000363138 105 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 Y_RNA.414-201ENST00000384011 101 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 SNORD115-47-201ENST00000391226 86 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 MIR208B-201ENST00000401172 77 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 RNA5SP425-201ENST00000410336 112 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS28Q9UK41 AC009161.1-201ENST00000417306 376 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 AL645568.3-201ENST00000433683 316 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 USP9YP28-201ENST00000435142 589 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 UBE2V1P8-201ENST00000437166 265 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS28Q9UK41 MTCO3P18-201ENST00000440206 761 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 AL353705.4-201ENST00000449661 238 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.32□□□□□ -2.04
VPS28Q9UK41 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 RNU6-991P-201ENST00000516168 107 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 EIF4A1P12-201ENST00000551910 141 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 CPDP1-201ENST00000579660 283 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 MIR8076-201ENST00000611401 83 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 AL359314.1-201ENST00000616913 261 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 MIR6766-201ENST00000622641 72 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 MIR6873-201ENST00000622788 63 ntBASIC2.32□□□□□ -2.04
VPS28Q9UK41 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS28Q9UK41 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS28Q9UK41 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
VPS28Q9UK41 RNU6-1159P-201ENST00000362933 107 ntBASIC2.31□□□□□ -2.04
VPS28Q9UK41 U8.2-201ENST00000363156 134 ntBASIC2.31□□□□□ -2.04
VPS28Q9UK41 Y_RNA.123-201ENST00000363338 102 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms