Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.16□□□□□ -1.9
TDP1Q9NUW8 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
TDP1Q9NUW8 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.16□□□□□ -1.9
TDP1Q9NUW8 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
TDP1Q9NUW8 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.9
TDP1Q9NUW8 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.153-201ENST00000363615 91 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 MIR628-201ENST00000385229 95 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 MIR548F4-201ENST00000408515 105 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 HMGB3P2-201ENST00000411913 584 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.15□□□□□ -1.91
TDP1Q9NUW8 RPL21P40-201ENST00000428586 483 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 HMGN1P18-201ENST00000457642 277 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 snoU13.6-201ENST00000458785 104 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 U8.20-201ENST00000459445 131 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 MTATP8P1-201ENST00000467115 207 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 UBE2DNL-203ENST00000474922 222 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 AC090525.1-201ENST00000479116 478 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.15□□□□□ -1.91
TDP1Q9NUW8 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.15□□□□□ -1.91
TDP1Q9NUW8 RNU6-911P-201ENST00000516523 104 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 AC022616.4-201ENST00000522985 181 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 AC040926.1-201ENST00000530195 238 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 AL117187.1-201ENST00000555482 181 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.15□□□□□ -1.91
TDP1Q9NUW8 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.15□□□□□ -1.91
TDP1Q9NUW8 MIR4513-201ENST00000581077 86 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 UCA1.1-201ENST00000620952 75 ntBASIC3.15□□□□□ -1.91
TDP1Q9NUW8 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.15□□□□□ -1.91
TDP1Q9NUW8 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
TDP1Q9NUW8 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
TDP1Q9NUW8 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
TDP1Q9NUW8 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.14□□□□□ -1.91
TDP1Q9NUW8 AL109809.4-201ENST00000603520 2185 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
TDP1Q9NUW8 RNA5SP139-201ENST00000364340 117 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 U8.10-201ENST00000384260 133 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 Y_RNA.557-201ENST00000384680 107 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 MIR153-2-201ENST00000385225 87 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 AC114482.1-201ENST00000418010 247 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.14□□□□□ -1.91
TDP1Q9NUW8 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.14□□□□□ -1.91
TDP1Q9NUW8 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.14□□□□□ -1.91
TDP1Q9NUW8 U8.22-201ENST00000459141 133 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 snoU13.14-201ENST00000459372 104 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 AC112771.1-201ENST00000463581 102 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 AIG1P1-201ENST00000503376 148 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 AC093852.1-201ENST00000503587 266 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 ANXA2P1-201ENST00000505539 926 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 MRPS36P2-201ENST00000512569 299 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 AC109329.1-201ENST00000518744 317 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 Z98751.3-201ENST00000604447 521 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 AC008121.3-201ENST00000618726 433 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 SNORD98-201ENST00000636377 67 ntBASIC3.14□□□□□ -1.91
TDP1Q9NUW8 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
TDP1Q9NUW8 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
TDP1Q9NUW8 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.14□□□□□ -1.91
TDP1Q9NUW8 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
TDP1Q9NUW8 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
TDP1Q9NUW8 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AC092435.3-201ENST00000565538 3654 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 RNU6-222P-201ENST00000362438 107 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 MIR487A-201ENST00000385009 80 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AL358075.3-201ENST00000426289 226 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AL139132.1-201ENST00000431587 344 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AP000705.1-201ENST00000454567 350 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.13□□□□□ -1.91
TDP1Q9NUW8 RN7SL442P-201ENST00000473804 320 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AC117440.1-201ENST00000474107 571 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 RPS29P26-201ENST00000477483 171 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 RPL36AP48-201ENST00000485521 314 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AC083906.5-201ENST00000503722 328 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 MTND4LP22-201ENST00000508209 276 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 RNU5F-2P-201ENST00000516066 82 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AC079598.5-201ENST00000547460 117 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AC073410.2-201ENST00000603240 332 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AC137590.2-201ENST00000619709 240 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 AC243829.7-201ENST00000633081 225 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 FAM35CP-201ENST00000554755 2470 ntBASIC3.13□□□□□ -1.91
TDP1Q9NUW8 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
TDP1Q9NUW8 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.13□□□□□ -1.91
TDP1Q9NUW8 RNU6-1027P-201ENST00000383998 107 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 RNU6-708P-201ENST00000384217 107 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 MIR186-201ENST00000384988 86 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 RPL21P75-201ENST00000396599 483 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 RPL21P28-201ENST00000401418 483 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 MTCO3P19-201ENST00000415864 321 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 DPH3P2-201ENST00000422618 250 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AL590556.1-201ENST00000423231 483 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AC012306.1-201ENST00000423267 114 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AIMP1P2-201ENST00000425294 312 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 Z98742.2-201ENST00000431564 187 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 RPL23AP22-201ENST00000437556 453 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.12□□□□□ -1.91
TDP1Q9NUW8 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms