| HINT3 | Q9NQE9 | GSTA3-201 | ENST00000211122 | 902 nt | APPRIS P1 TSL 1 (best) BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | snoU2_19.1-201 | ENST00000362361 | 80 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | DEFB119-202 | ENST00000376315 | 324 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | MIR634-201 | ENST00000385208 | 97 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC243428.1-201 | ENST00000421099 | 264 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL591501.1-201 | ENST00000439992 | 495 nt | TSL 5 BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC025750.2-201 | ENST00000442609 | 450 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL353705.4-201 | ENST00000449661 | 238 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC090515.1-201 | ENST00000465295 | 476 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC021491.3-201 | ENST00000513378 | 156 nt | TSL 3 BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | HSPE1P20-201 | ENST00000538133 | 289 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC005899.2-201 | ENST00000584353 | 90 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL713866.2-201 | ENST00000603579 | 219 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | B3GNTL1P2-201 | ENST00000603673 | 288 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | Z98751.3-201 | ENST00000604447 | 521 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | E2F5-208 | ENST00000521429 | 1551 nt | TSL 5 BASIC | 2.44 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | LIG4-203 | ENST00000442234 | 3982 nt | APPRIS P1 TSL 1 (best) BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | GLMN-201 | ENST00000370360 | 1995 nt | APPRIS P1 TSL 1 (best) BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | GABRG2-209 | ENST00000638660 | 3799 nt | TSL 5 BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | SLC6A15-202 | ENST00000309283 | 3108 nt | TSL 5 BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | ZNF299P-201 | ENST00000406845 | 1804 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RNU5B-2P-201 | ENST00000363036 | 113 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | SNORA80A-201 | ENST00000363922 | 136 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RNU6-890P-201 | ENST00000384121 | 107 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | Y_RNA.535-201 | ENST00000384612 | 99 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | TRAV34-201 | ENST00000390461 | 349 nt | APPRIS P1 BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | SNORA75.6-201 | ENST00000391318 | 127 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC006150.1-201 | ENST00000412014 | 263 nt | TSL 5 BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AF228730.4-201 | ENST00000421457 | 183 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | LINC01549-201 | ENST00000440664 | 714 nt | TSL 3 BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL135938.1-201 | ENST00000443141 | 297 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | ELOCP24-201 | ENST00000456370 | 334 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RPS3P1-201 | ENST00000456781 | 192 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AP001486.1-201 | ENST00000463339 | 476 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RPL23AP75-201 | ENST00000491601 | 451 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC099520.1-202 | ENST00000503650 | 777 nt | TSL 3 BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC021146.2-201 | ENST00000504736 | 556 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC074131.1-201 | ENST00000514662 | 253 nt | TSL 2 BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RNU6-307P-201 | ENST00000516743 | 106 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RNU6-826P-201 | ENST00000516827 | 104 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC025580.2-205 | ENST00000559960 | 552 nt | TSL 4 BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | ELOCP29-201 | ENST00000588193 | 334 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RPL23AP88-201 | ENST00000605759 | 454 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC005014.2-201 | ENST00000607795 | 599 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC133104.2-201 | ENST00000615272 | 193 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC092608.2-201 | ENST00000624427 | 218 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | ZNF404-202 | ENST00000587539 | 1851 nt | APPRIS P2 TSL 5 BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | ARHGAP11A-207 | ENST00000565905 | 3318 nt | TSL 2 BASIC | 2.43 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | PRKACB-218 | ENST00000610703 | 4240 nt | TSL 2 BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | ST7-AS2-206 | ENST00000456577 | 1351 nt | TSL 1 (best) BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RNU4-15P-201 | ENST00000362613 | 141 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RNU6-595P-201 | ENST00000363944 | 107 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RNU4-56P-201 | ENST00000364700 | 142 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RNU6-1032P-201 | ENST00000384100 | 107 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | SNORA41-201 | ENST00000384675 | 132 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RNA5SP494-201 | ENST00000410653 | 129 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RPL19P1-201 | ENST00000411635 | 428 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL358453.1-201 | ENST00000422522 | 250 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC012306.1-201 | ENST00000423267 | 114 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC087499.2-201 | ENST00000432861 | 149 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RPL23AP50-201 | ENST00000434149 | 455 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | INTS6-AS1-201 | ENST00000434512 | 466 nt | TSL 3 BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC133865.1-201 | ENST00000438619 | 339 nt | TSL 3 BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC011816.1-201 | ENST00000441346 | 546 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | EEF1B2P7-201 | ENST00000451177 | 676 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL136164.1-201 | ENST00000456795 | 352 nt | TSL 3 BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RNU7-152P-201 | ENST00000458982 | 64 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AF186996.7-201 | ENST00000492781 | 209 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RNU6-567P-201 | ENST00000516746 | 107 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RN7SKP40-201 | ENST00000517211 | 242 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC023866.1-201 | ENST00000518064 | 579 nt | TSL 4 BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC084816.1-207 | ENST00000538317 | 584 nt | TSL 4 BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC092070.3-201 | ENST00000596041 | 337 nt | TSL 3 BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL670379.2-201 | ENST00000604983 | 252 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL133255.1-201 | ENST00000606374 | 441 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL050343.2-201 | ENST00000607338 | 280 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | ZNRD1-AS1_2.5-201 | ENST00000614729 | 76 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC090517.3-201 | ENST00000625170 | 141 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL591030.1-201 | ENST00000626131 | 627 nt | TSL 3 BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | SCARNA4-201 | ENST00000629045 | 128 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | ZBTB26-202 | ENST00000373656 | 4443 nt | APPRIS P1 TSL 1 (best) BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC006026.1-201 | ENST00000444025 | 1803 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | ZNF567-201 | ENST00000360729 | 2691 nt | TSL 1 (best) BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC242426.3-202 | ENST00000607149 | 2397 nt | TSL 5 BASIC | 2.42 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | HIF1A-201 | ENST00000323441 | 3555 nt | TSL 1 (best) BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | SCN1A-219 | ENST00000641575 | 12874 nt | APPRIS ALT1 BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | SLCO1B3-201 | ENST00000261196 | 2840 nt | APPRIS P1 TSL 1 (best) BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | SNORD56.5-201 | ENST00000364281 | 72 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | SNORA18.3-201 | ENST00000384122 | 132 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL356010.2-201 | ENST00000422844 | 197 nt | TSL 3 BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | RAB6C-AS1-202 | ENST00000433431 | 123 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AP000705.1-201 | ENST00000454567 | 350 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | snoU13.6-201 | ENST00000458785 | 104 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AL049873.1-201 | ENST00000480540 | 376 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | LINC02118-202 | ENST00000510583 | 419 nt | TSL 3 BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | VTRNA2-2P-201 | ENST00000516091 | 103 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | IGHVII-62-1-201 | ENST00000519283 | 235 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | AC004486.1-201 | ENST00000546846 | 233 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | MIR3923-201 | ENST00000579521 | 83 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HINT3 | Q9NQE9 | MIR4635-201 | ENST00000583759 | 79 nt | BASIC | 2.41 | □□□□□ -2.02 | | |