Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AC000111.3-201ENST00000433478 193 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 RNU7-180P-201ENST00000459240 63 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-261P-201ENST00000459506 102 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 CCDC34P1-201ENST00000507441 517 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AC010493.1-201ENST00000513479 292 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AC012507.3-201ENST00000603556 477 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AC103810.8-201ENST00000607347 118 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 RNA5SP432-201ENST00000362480 116 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-552P-201ENST00000362869 119 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-78P-201ENST00000362897 107 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 Y_RNA.89-201ENST00000363031 102 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 RNY3P3-201ENST00000363816 102 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-371P-201ENST00000364283 108 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-1322P-201ENST00000364309 107 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 Y_RNA.390-201ENST00000383932 102 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-160P-201ENST00000384591 107 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-1222P-201ENST00000384615 107 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AC019129.1-201ENST00000403786 261 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-1068P-201ENST00000410958 103 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 MTCO1P20-201ENST00000425366 358 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AL669831.1-202ENST00000428504 417 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 GTF2IP13-201ENST00000438487 386 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AC093259.1-201ENST00000509755 300 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 CBX3P4-201ENST00000538909 354 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AL118558.2-201ENST00000556294 238 ntBASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.84□□□□□ -2.11
ZNF540Q8NDQ6 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
ZNF540Q8NDQ6 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 WWP1P1-201ENST00000466609 2769 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-527P-201ENST00000363425 104 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-743P-201ENST00000364151 106 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 Y_RNA.255-201ENST00000364581 97 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-996P-201ENST00000365438 107 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 Y_RNA.402-201ENST00000383972 102 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 MIR30A-201ENST00000385092 71 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 MIR514A2-201ENST00000385131 88 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 MIR514A3-201ENST00000385132 88 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 SNORA48.1-201ENST00000390879 135 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AL357139.1-201ENST00000407792 426 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 RN7SKP32-201ENST00000410167 303 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AC027124.2-201ENST00000428249 105 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AL596276.1-201ENST00000434465 418 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 HSPE1P21-201ENST00000438283 308 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AL035666.1-201ENST00000446195 348 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AC022364.2-201ENST00000457963 554 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 RNU7-182P-201ENST00000459009 62 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 RNU7-63P-201ENST00000459054 62 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-333P-201ENST00000459117 107 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 MTCO3P38-201ENST00000468910 766 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AL163973.1-201ENST00000484753 577 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AC132942.1-201ENST00000486753 483 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-1281P-201ENST00000516223 105 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AC109635.3-201ENST00000529536 185 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AL354950.2-201ENST00000617939 290 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 YWHAEP7-203ENST00000622054 312 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 AC130454.1-201ENST00000622948 401 ntBASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 FER-210ENST00000628534 558 ntTSL 5 BASIC1.83□□□□□ -2.12
ZNF540Q8NDQ6 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AL356292.1-201ENST00000283110 373 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 Y_RNA.9-201ENST00000362354 101 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-23P-201ENST00000363283 107 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-522P-201ENST00000364497 107 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-1127P-201ENST00000384580 107 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms