Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 RNA5SP341-201ENST00000516261 117 ntBASIC2.59□□□□□ -1.99
CLIP4Q8N3C7 ACA59.2-201ENST00000517061 156 ntBASIC2.59□□□□□ -1.99
CLIP4Q8N3C7 SNORA31.23-201ENST00000517219 133 ntBASIC2.59□□□□□ -1.99
CLIP4Q8N3C7 RN7SKP57-201ENST00000517248 293 ntBASIC2.59□□□□□ -1.99
CLIP4Q8N3C7 MRPS36P4-201ENST00000534436 298 ntBASIC2.59□□□□□ -1.99
CLIP4Q8N3C7 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.59□□□□□ -1.99
CLIP4Q8N3C7 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.59□□□□□ -1.99
CLIP4Q8N3C7 AC113195.1-201ENST00000579952 141 ntBASIC2.59□□□□□ -1.99
CLIP4Q8N3C7 AC060766.3-201ENST00000591442 263 ntBASIC2.59□□□□□ -1.99
CLIP4Q8N3C7 7SK.7-201ENST00000603504 247 ntBASIC2.59□□□□□ -1.99
CLIP4Q8N3C7 AC138305.3-201ENST00000624988 240 ntBASIC2.59□□□□□ -1.99
CLIP4Q8N3C7 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.59□□□□□ -2
CLIP4Q8N3C7 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.59□□□□□ -2
CLIP4Q8N3C7 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.59□□□□□ -2
CLIP4Q8N3C7 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC096644.4-201ENST00000563417 2912 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC233981.2-201ENST00000611524 1614 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 SNORD14.1-201ENST00000365609 90 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 RNU6-463P-201ENST00000384340 107 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 RNU6-851P-201ENST00000384565 107 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 MIR544A-201ENST00000384855 91 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 RNU6-823P-201ENST00000391042 103 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 SNORA48.5-201ENST00000391143 135 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
CLIP4Q8N3C7 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.58□□□□□ -2
CLIP4Q8N3C7 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.58□□□□□ -2
CLIP4Q8N3C7 AL161651.1-201ENST00000440882 223 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 AL513124.1-201ENST00000450410 614 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 U8.20-201ENST00000459445 131 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC083906.5-201ENST00000503722 328 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC097462.2-201ENST00000504623 481 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.58□□□□□ -2
CLIP4Q8N3C7 SNORA70.24-201ENST00000517233 118 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC006600.1-201ENST00000572529 153 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 MIR5188-201ENST00000583467 113 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC124312.5-201ENST00000604451 268 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 AL138825.1-201ENST00000618587 192 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 MIR3529-201ENST00000637713 78 ntBASIC2.58□□□□□ -2
CLIP4Q8N3C7 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.58□□□□□ -2
CLIP4Q8N3C7 AC004944.1-201ENST00000517807 3059 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 Z82195.2-201ENST00000612348 18351 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.57□□□□□ -2
CLIP4Q8N3C7 Y_RNA.153-201ENST00000363615 91 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 Y_RNA.405-201ENST00000383979 100 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 RNU6-1027P-201ENST00000383998 107 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 Y_RNA.451-201ENST00000384200 100 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 RNU6-574P-201ENST00000384265 107 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 RNU6-843P-201ENST00000384454 104 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 Y_RNA.524-201ENST00000384564 100 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 Y_RNA.561-201ENST00000384694 100 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 MIR491-201ENST00000384877 84 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 MIR568-201ENST00000385036 95 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 MIR767-201ENST00000390228 109 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 SNORA69.1-201ENST00000390904 137 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 SNORA12.2-201ENST00000391040 156 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 MTCYBP2-201ENST00000407745 171 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 MIR548F4-201ENST00000408515 105 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.57□□□□□ -2
CLIP4Q8N3C7 DPH3P2-201ENST00000422618 250 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.57□□□□□ -2
CLIP4Q8N3C7 MTCO3P29-201ENST00000432119 779 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 SNRPGP7-201ENST00000469016 106 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 RPL22P13-201ENST00000493291 347 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.57□□□□□ -2
CLIP4Q8N3C7 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 AC091874.1-201ENST00000511402 339 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 RNU7-175P-201ENST00000515915 61 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 RNU5F-8P-201ENST00000515941 111 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 SNORA40.14-201ENST00000516543 86 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.57□□□□□ -2
CLIP4Q8N3C7 ZNF861P-201ENST00000588126 639 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 AC016727.2-201ENST00000603988 621 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.57□□□□□ -2
CLIP4Q8N3C7 7SK.10-201ENST00000621414 298 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 AC010297.1-201ENST00000623948 149 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.57□□□□□ -2
CLIP4Q8N3C7 FO624990.1-201ENST00000636373 85 ntBASIC2.57□□□□□ -2
CLIP4Q8N3C7 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.57□□□□□ -2
CLIP4Q8N3C7 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.57□□□□□ -2
CLIP4Q8N3C7 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.57□□□□□ -2
CLIP4Q8N3C7 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CLIP4Q8N3C7 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
CLIP4Q8N3C7 RNU6-874P-201ENST00000362390 105 ntBASIC2.56□□□□□ -2
CLIP4Q8N3C7 RNU1-105P-201ENST00000363470 161 ntBASIC2.56□□□□□ -2
CLIP4Q8N3C7 SNORD32A-201ENST00000364805 84 ntBASIC2.56□□□□□ -2
CLIP4Q8N3C7 DEFA7P-201ENST00000382676 285 ntBASIC2.56□□□□□ -2
CLIP4Q8N3C7 RNU6-968P-201ENST00000384076 107 ntBASIC2.56□□□□□ -2
CLIP4Q8N3C7 RNU6-196P-201ENST00000384315 107 ntBASIC2.56□□□□□ -2
CLIP4Q8N3C7 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.56□□□□□ -2
CLIP4Q8N3C7 EEF1A1P41-201ENST00000414667 207 ntBASIC2.56□□□□□ -2
CLIP4Q8N3C7 EIF1AXP1-201ENST00000419267 435 ntBASIC2.56□□□□□ -2
CLIP4Q8N3C7 Z82188.1-201ENST00000436709 154 ntBASIC2.56□□□□□ -2
CLIP4Q8N3C7 AP001025.1-201ENST00000486139 332 ntBASIC2.56□□□□□ -2
CLIP4Q8N3C7 AC104564.1-201ENST00000493028 407 ntBASIC2.56□□□□□ -2
CLIP4Q8N3C7 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 148.9 ms