Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL645944.1-201ENST00000603857 493 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 AL162713.1-201ENST00000604480 262 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 AC097372.5-201ENST00000623665 376 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 AC006386.2-201ENST00000624491 75 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 AC012005.1-201ENST00000624575 75 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.38□□□□□ -1.87
USP39Q53GS9 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP39Q53GS9 DEFB108F-201ENST00000344638 222 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 MIR30E-201ENST00000362104 92 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 MIR422A-201ENST00000362286 90 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 Y_RNA.122-201ENST00000363331 96 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 RNU6-740P-201ENST00000364734 105 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 RNU6-318P-201ENST00000384283 103 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 RNA5SP213-201ENST00000391031 106 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 AL357075.1-201ENST00000404107 726 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.38□□□□□ -1.87
USP39Q53GS9 AL357552.1-201ENST00000445254 415 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 snoU13.30-201ENST00000458951 104 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 RPS29P26-201ENST00000477483 171 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 AL160314.1-201ENST00000490836 438 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 RNU6-377P-201ENST00000515965 102 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 RNU6-346P-201ENST00000516288 111 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 SNORA31.19-201ENST00000517079 126 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 AC093331.1-201ENST00000521474 169 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.38□□□□□ -1.87
USP39Q53GS9 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.38□□□□□ -1.87
USP39Q53GS9 AL356274.2-201ENST00000624379 3752 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP39Q53GS9 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
USP39Q53GS9 HAUS6P2-201ENST00000433254 2404 ntBASIC3.38□□□□□ -1.87
USP39Q53GS9 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.38□□□□□ -1.87
USP39Q53GS9 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USP39Q53GS9 RNU6-704P-201ENST00000364162 103 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 Y_RNA.245-201ENST00000364493 95 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 Y_RNA.292-201ENST00000364904 97 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 RNU6-17P-201ENST00000384245 107 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 RNU6-18P-201ENST00000384527 107 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
USP39Q53GS9 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
USP39Q53GS9 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP39Q53GS9 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.37□□□□□ -1.87
USP39Q53GS9 AC005002.2-201ENST00000438228 269 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 AC092798.1-201ENST00000458542 409 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 AC109925.1-201ENST00000478069 331 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.37□□□□□ -1.87
USP39Q53GS9 MRPL42P6-201ENST00000486397 371 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 AC006483.1-201ENST00000487308 313 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 SNORA31.1-201ENST00000515993 133 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 RNU7-200P-201ENST00000516105 62 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 RNU6-1278P-201ENST00000516130 107 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 SNORA31.5-201ENST00000516190 133 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 RNU6-1256P-201ENST00000516539 103 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 MIR4782-201ENST00000577987 79 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 MIR4282-201ENST00000583613 67 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 AL133393.1-201ENST00000603277 287 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 AC090132.2-201ENST00000615881 347 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP39Q53GS9 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP39Q53GS9 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USP39Q53GS9 MAPK10-322ENST00000641485 4530 ntBASIC3.37□□□□□ -1.87
USP39Q53GS9 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.37□□□□□ -1.87
USP39Q53GS9 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP39Q53GS9 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP39Q53GS9 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP39Q53GS9 RNU4-9P-201ENST00000364951 139 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 RNU6-326P-201ENST00000365480 107 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 AP002088.1-201ENST00000382740 395 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 MIR613-201ENST00000385248 95 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 AL033519.2-201ENST00000403958 392 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.36□□□□□ -1.87
USP39Q53GS9 PIGFP3-201ENST00000441918 722 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 NDUFB4P10-201ENST00000452541 359 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.36□□□□□ -1.87
USP39Q53GS9 AC010401.1-201ENST00000463867 348 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 RPL23AP75-201ENST00000491601 451 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 RNU6-572P-201ENST00000516724 80 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 SNORA31.18-201ENST00000517043 134 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 RNU6-1231P-201ENST00000517185 103 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 MTND5P41-201ENST00000517498 206 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 AC011602.1-201ENST00000546484 331 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.36□□□□□ -1.87
USP39Q53GS9 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.36□□□□□ -1.87
USP39Q53GS9 AC072026.1-201ENST00000605023 201 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 SCARNA4-201ENST00000629045 128 ntBASIC3.36□□□□□ -1.87
USP39Q53GS9 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.36□□□□□ -1.87
USP39Q53GS9 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.36□□□□□ -1.87
USP39Q53GS9 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP39Q53GS9 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
USP39Q53GS9 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
USP39Q53GS9 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.35□□□□□ -1.87
USP39Q53GS9 RNU6-78P-201ENST00000362897 107 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 RNU6-1020P-201ENST00000363684 107 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 RNU1-140P-201ENST00000365040 165 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 RNU5E-7P-201ENST00000365290 117 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 RNU6-926P-201ENST00000384075 107 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 MIR1289-1-201ENST00000408836 144 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 NDUFB4P7-201ENST00000423198 363 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms