Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC013470.1-201ENST00000453438 462 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 RNVU1-2-201ENST00000516326 135 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 SNORA43.2-201ENST00000516652 128 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AC023050.2-201ENST00000544968 387 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 PCMTD1P2-201ENST00000565017 355 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AL353149.1-201ENST00000610667 244 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AL445523.1-201ENST00000451184 1362 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 RNU6-105P-201ENST00000363909 104 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 RNU6-61P-201ENST00000365528 109 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 RNU6-968P-201ENST00000384076 107 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 MIR597-201ENST00000384968 97 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 MTCO3P41-201ENST00000414801 328 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 AL135790.2-201ENST00000437701 267 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 AL358794.1-201ENST00000445689 381 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 RNA5SP395-201ENST00000516567 118 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 AC105185.1-201ENST00000518705 535 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 AL512310.8-201ENST00000550183 120 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 AC078795.2-201ENST00000602835 1252 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 AC069114.2-201ENST00000604699 304 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 AL139022.2-201ENST00000606934 443 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 AC005520.5-201ENST00000613926 164 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 AC024940.5-201ENST00000622889 474 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 ELL2P3-201ENST00000457883 1602 ntBASIC0.72□□□□□ -2.29
CCDC88AQ3V6T2 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-1274P-201ENST00000384557 107 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 MIR520A-201ENST00000384862 85 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 EEF1A1P40-201ENST00000412883 573 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 EEF1A1P39-201ENST00000440791 250 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 ZNF736P4Y-201ENST00000454995 1243 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-1146P-201ENST00000516282 102 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 RNU5A-4P-201ENST00000516588 111 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AC021231.3-201ENST00000558497 370 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 MIR3118-1-201ENST00000581787 76 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AC008945.2-201ENST00000606056 604 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AC012409.4-201ENST00000612923 249 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 RMST_4.1-201ENST00000616886 107 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AP002782.1-201ENST00000623107 614 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 MIR302D-201ENST00000362275 68 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 U3.4-201ENST00000363352 213 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 Y_RNA.302-201ENST00000364997 102 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 MIR608-201ENST00000384820 100 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 RAP1BP3-201ENST00000407180 549 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 MIR1284-201ENST00000408337 120 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 RNU2-70P-201ENST00000410718 179 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AC132479.1-201ENST00000449160 144 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AC104982.1-201ENST00000478775 574 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AC022447.4-201ENST00000504053 364 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AP003122.4-201ENST00000530980 758 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AL356057.1-201ENST00000533798 831 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AC123904.2-201ENST00000548059 300 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AC012676.2-201ENST00000619258 186 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 AC099654.5-201ENST00000636479 350 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 U4.7-201ENST00000638126 106 ntBASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
CCDC88AQ3V6T2 Y_RNA.274-201ENST00000364714 101 ntBASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-733P-201ENST00000410759 104 ntBASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 CALM2P2-201ENST00000428512 440 ntBASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 RPS23P5-201ENST00000495419 428 ntBASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 AC115990.1-201ENST00000526957 301 ntBASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 AL442163.3-201ENST00000554110 156 ntBASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 AC090517.1-201ENST00000569307 266 ntBASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 AC008752.3-201ENST00000588113 712 ntBASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 AL031667.3-201ENST00000620124 655 ntBASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 AC013437.2-201ENST00000639587 677 ntBASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
CCDC88AQ3V6T2 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-384P-201ENST00000364900 104 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 Y_RNA.324-201ENST00000365165 102 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-387P-201ENST00000411331 105 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AC123900.1-201ENST00000420390 96 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 TRIM60P10Y-201ENST00000425589 751 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 RPL23AP95-201ENST00000426806 265 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AL669831.1-202ENST00000428504 417 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 ART2BP-201ENST00000453501 499 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-276P-201ENST00000516114 96 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-87P-201ENST00000607561 108 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AC068787.1-201ENST00000623908 691 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 Y_RNA.97-201ENST00000363094 102 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 MIR92A1-201ENST00000385233 78 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 RNA5SP63-201ENST00000391225 112 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms