Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC012409.4-201ENST00000612923 249 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 AC106800.4-201ENST00000614905 153 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 uc_338.17-201ENST00000619633 179 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 RNU6-78P-201ENST00000362897 107 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 Y_RNA.132-201ENST00000363421 102 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 SNORA63D-201ENST00000364359 132 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
CHD3Q12873 MIR544A-201ENST00000384855 91 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 MIR558-201ENST00000384920 94 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 ELOCP17-201ENST00000414751 326 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 ELOCP9-201ENST00000418624 239 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 C8orf59P1-201ENST00000429930 303 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.48□□□□□ -2.33
CHD3Q12873 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC0.48□□□□□ -2.33
CHD3Q12873 AL133373.1-201ENST00000497098 94 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC0.48□□□□□ -2.33
CHD3Q12873 BNIP3P26-201ENST00000600827 554 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 AC136475.10-201ENST00000620253 385 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 AC092656.1-203ENST00000624134 423 ntBASIC0.48□□□□□ -2.33
CHD3Q12873 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.48□□□□□ -2.33
CHD3Q12873 ELL2P3-201ENST00000457883 1602 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 AC099786.3-201ENST00000565735 1410 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 RNU2-64P-201ENST00000411315 191 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.47□□□□□ -2.33
CHD3Q12873 AC104629.1-201ENST00000494226 508 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.47□□□□□ -2.33
CHD3Q12873 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.47□□□□□ -2.33
CHD3Q12873 RNU6-567P-201ENST00000516746 107 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
CHD3Q12873 AC023932.2-201ENST00000603176 175 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 AC131235.4-201ENST00000609288 620 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 AL353149.1-201ENST00000610667 244 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 AC068880.4-201ENST00000623082 495 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 AC092268.1-201ENST00000342691 405 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 Y_RNA.33-201ENST00000362591 102 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 RNU6-439P-201ENST00000384188 106 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 MIR515-2-201ENST00000384883 83 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 MIR515-1-201ENST00000384884 83 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 SNORA40.2-201ENST00000390847 128 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC0.47□□□□□ -2.33
CHD3Q12873 EEF1A1P40-201ENST00000412883 573 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 ARL5AP1-201ENST00000418991 388 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC0.47□□□□□ -2.33
CHD3Q12873 snoU13.9-201ENST00000458927 103 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 RNU6-1146P-201ENST00000516282 102 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 AC025678.1-201ENST00000567861 338 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 MTCYBP33-201ENST00000575007 1130 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 AC078795.2-201ENST00000602835 1252 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
CHD3Q12873 AL121895.2-201ENST00000619558 447 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC0.47□□□□□ -2.33
CHD3Q12873 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC0.47□□□□□ -2.33
CHD3Q12873 AC120349.3-201ENST00000624377 529 ntBASIC0.47□□□□□ -2.33
CHD3Q12873 MIR200A-201ENST00000384875 90 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 SNORD99-201ENST00000408612 74 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 RNA5SP201-201ENST00000410316 124 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 TRIM60P10Y-201ENST00000425589 751 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 AC013262.1-201ENST00000426710 252 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 AC073614.1-201ENST00000438690 650 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.46□□□□□ -2.34
CHD3Q12873 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.46□□□□□ -2.34
CHD3Q12873 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC0.46□□□□□ -2.34
CHD3Q12873 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC0.46□□□□□ -2.34
CHD3Q12873 RNA5SP255-201ENST00000516370 107 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 RNU6-677P-201ENST00000516914 101 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.46□□□□□ -2.34
CHD3Q12873 AP001893.2-201ENST00000526949 202 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC0.46□□□□□ -2.34
CHD3Q12873 AC109810.1-201ENST00000534066 224 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 AC087894.1-201ENST00000538359 518 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.46□□□□□ -2.34
CHD3Q12873 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.46□□□□□ -2.34
CHD3Q12873 AC010620.1-201ENST00000601088 1102 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 AL592221.1-201ENST00000605266 382 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 AC104073.3-201ENST00000610942 955 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 AC068787.1-201ENST00000623908 691 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 AC067863.3-201ENST00000624172 122 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 AC106858.1-201ENST00000637497 429 ntBASIC0.46□□□□□ -2.34
CHD3Q12873 snoU2-30.2-201ENST00000362805 70 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 Y_RNA.390-201ENST00000383932 102 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 Y_RNA.518-201ENST00000384552 113 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 SNORA48.1-201ENST00000390879 135 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 COX6CP10-201ENST00000416832 224 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 RPL22P18-201ENST00000417197 377 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 RPS24P1-201ENST00000438550 371 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.45□□□□□ -2.34
CHD3Q12873 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.45□□□□□ -2.34
CHD3Q12873 AC090142.3-201ENST00000519012 385 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 SUMO2P16-201ENST00000519475 264 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.45□□□□□ -2.34
CHD3Q12873 CENPUP1-201ENST00000526649 1202 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 AC091135.1-201ENST00000585943 307 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
CHD3Q12873 DEFB131E-202ENST00000602581 683 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 AC090578.1-201ENST00000604955 591 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 AC072039.2-201ENST00000608883 439 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 MIR8063-201ENST00000621930 81 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 MIR6759-201ENST00000638110 65 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 AC073343.1-201ENST00000328239 651 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms