Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 ZNF826P-207ENST00000622273 1910 ntBASIC3.58□□□□□ -1.84
NKX3-2P78367 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
NKX3-2P78367 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
NKX3-2P78367 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
NKX3-2P78367 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
NKX3-2P78367 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
NKX3-2P78367 MIR153-2-201ENST00000385225 87 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 RPS4XP3-201ENST00000398541 413 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 FTH1P15-201ENST00000406984 280 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 MIR548M-201ENST00000408260 86 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 RNU6-1245P-201ENST00000411130 106 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 AC074117.2-201ENST00000417130 397 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 EIF1AXP1-201ENST00000419267 435 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 YPEL5P1-201ENST00000419731 367 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 HMGN2P20-201ENST00000437531 273 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 AC007969.2-201ENST00000441891 191 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 SNRPGP7-201ENST00000469016 106 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 RPS29P20-201ENST00000489592 171 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.57□□□□□ -1.84
NKX3-2P78367 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-2P78367 MIR3690-201ENST00000580266 75 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 UBL5P2-201ENST00000583788 219 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 AC099778.2-201ENST00000610904 211 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 AC024581.2-201ENST00000619986 252 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 SNORA50A-202ENST00000629536 136 ntBASIC3.57□□□□□ -1.84
NKX3-2P78367 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.57□□□□□ -1.84
NKX3-2P78367 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
NKX3-2P78367 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.56□□□□□ -1.84
NKX3-2P78367 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
NKX3-2P78367 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.56□□□□□ -1.84
NKX3-2P78367 AF117829.1-206ENST00000621883 3802 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
NKX3-2P78367 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.56□□□□□ -1.84
NKX3-2P78367 RNU5B-2P-201ENST00000363036 113 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 Y_RNA.200-201ENST00000364018 102 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 Y_RNA.286-201ENST00000364813 102 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 RNU1-139P-201ENST00000391307 165 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 EI24P2-201ENST00000397776 1076 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 MIR1298-201ENST00000408783 112 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 RNA5SP129-201ENST00000410276 118 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 RPL23AP95-201ENST00000426806 265 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 AL445305.1-201ENST00000432577 575 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.56□□□□□ -1.84
NKX3-2P78367 AC125238.1-201ENST00000448842 249 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 RPL37P4-201ENST00000448908 268 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 RPS27AP10-201ENST00000496103 208 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 SERF1AP1-201ENST00000514575 187 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 RNU6-1114P-201ENST00000516022 107 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 AC027288.2-201ENST00000553028 243 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.56□□□□□ -1.84
NKX3-2P78367 MIR4738-201ENST00000579134 87 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 RPL12P50-201ENST00000603116 116 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 MIR7106-201ENST00000612419 65 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 U2.14-201ENST00000615943 113 ntBASIC3.56□□□□□ -1.84
NKX3-2P78367 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
NKX3-2P78367 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
NKX3-2P78367 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
NKX3-2P78367 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.56□□□□□ -1.84
NKX3-2P78367 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.56□□□□□ -1.84
NKX3-2P78367 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
NKX3-2P78367 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
NKX3-2P78367 RNU6-50P-201ENST00000362356 103 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 Y_RNA.76-201ENST00000362931 109 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 Y_RNA.180-201ENST00000363867 113 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 RNU6-290P-201ENST00000365212 101 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 SNORD63-201ENST00000384262 68 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
NKX3-2P78367 RNU4-30P-201ENST00000410245 143 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 SNORD12B-201ENST00000410433 91 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.55□□□□□ -1.84
NKX3-2P78367 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-2P78367 AC005002.2-201ENST00000438228 269 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.55□□□□□ -1.84
NKX3-2P78367 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-2P78367 MRPL42P6-201ENST00000486397 371 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 RNA5SP468-201ENST00000516782 93 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 RNU6-928P-201ENST00000516876 104 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 AC107934.2-201ENST00000518653 310 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 CR383656.8-201ENST00000549046 145 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 UBL5P4-201ENST00000562584 236 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-2P78367 AC006023.1-201ENST00000603944 259 ntBASIC3.55□□□□□ -1.84
NKX3-2P78367 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-2P78367 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-2P78367 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-2P78367 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
NKX3-2P78367 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
NKX3-2P78367 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
NKX3-2P78367 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-2P78367 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-2P78367 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-2P78367 RNU6-858P-201ENST00000362436 107 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 Y_RNA.270-201ENST00000364693 104 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 SNORA36A-201ENST00000384221 132 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 U8.10-201ENST00000384260 133 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 Y_RNA.504-201ENST00000384481 104 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 MIR544A-201ENST00000384855 91 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 MIR10B-201ENST00000385011 110 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 MIR888-201ENST00000401186 77 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 WARS2P1-201ENST00000429678 537 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms