Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC010531.2-201ENST00000465012 153 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 AC048334.1-201ENST00000477975 159 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 SRP72-202ENST00000504757 745 ntTSL 2 BASIC0.32□□□□□ -2.36
FOXA3P55318 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC0.32□□□□□ -2.36
FOXA3P55318 RNU6-123P-201ENST00000516163 102 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 RNU2-10P-201ENST00000516375 211 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 RNU6-1098P-201ENST00000516772 96 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 MTND2P7-201ENST00000521337 640 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 CYP4A27P-201ENST00000567218 190 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 AC012507.3-201ENST00000603556 477 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 AL353765.1-201ENST00000605514 183 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
FOXA3P55318 AC092106.3-201ENST00000611308 722 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 AC006386.1-201ENST00000619436 415 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 AC134026.1-201ENST00000623249 2239 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 MIR337-201ENST00000362281 93 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 RNU4-12P-201ENST00000365233 139 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 RNU5E-7P-201ENST00000365290 117 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 RNU6-877P-201ENST00000383868 107 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
FOXA3P55318 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
FOXA3P55318 RNU6-298P-201ENST00000390888 96 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AC019070.1-201ENST00000415008 1024 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AL031779.1-201ENST00000415663 330 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 C1DP2-201ENST00000418167 426 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.31□□□□□ -2.36
FOXA3P55318 CETN4P-201ENST00000432407 469 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.31□□□□□ -2.36
FOXA3P55318 AL360271.2-201ENST00000447710 161 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AC098869.1-201ENST00000481627 292 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AL163973.1-201ENST00000484753 577 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AC104806.1-201ENST00000508720 308 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 SNORA19.3-201ENST00000516165 130 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 RNU5F-4P-201ENST00000516581 114 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC0.31□□□□□ -2.36
FOXA3P55318 AC107934.1-201ENST00000522215 217 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.31□□□□□ -2.36
FOXA3P55318 ADI1P3-201ENST00000549509 470 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AC018659.1-201ENST00000551083 169 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC0.31□□□□□ -2.36
FOXA3P55318 MTATP6P3-201ENST00000581686 676 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 MIR3136-201ENST00000583498 78 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 HMGN1P30-201ENST00000589286 268 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AC008147.4-201ENST00000617570 1204 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 AC136475.10-201ENST00000620253 385 ntBASIC0.31□□□□□ -2.36
FOXA3P55318 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.31□□□□□ -2.36
FOXA3P55318 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
FOXA3P55318 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.3□□□□□ -2.36
FOXA3P55318 RNU6-433P-201ENST00000363216 104 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 SNORD114-22-201ENST00000365423 72 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 RNU6-142P-201ENST00000384019 107 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.3□□□□□ -2.36
FOXA3P55318 AL031577.2-201ENST00000404133 280 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 MIR1276-201ENST00000408707 83 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.3□□□□□ -2.36
FOXA3P55318 AC114737.2-201ENST00000421583 173 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AL590135.1-201ENST00000422215 156 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AC011233.1-201ENST00000422812 283 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AC019205.3-201ENST00000424573 156 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AC244023.1-201ENST00000426884 112 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 CALM2P2-201ENST00000428512 440 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AC098934.3-201ENST00000430450 190 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC0.3□□□□□ -2.36
FOXA3P55318 AC092628.1-201ENST00000436250 252 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.3□□□□□ -2.36
FOXA3P55318 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.3□□□□□ -2.36
FOXA3P55318 AL358794.1-201ENST00000445689 381 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AC016700.2-201ENST00000446011 156 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AL049829.1-201ENST00000465411 156 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC0.3□□□□□ -2.36
FOXA3P55318 AC015911.1-201ENST00000495111 156 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
FOXA3P55318 RNU4-57P-201ENST00000515980 135 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.3□□□□□ -2.36
FOXA3P55318 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC0.3□□□□□ -2.36
FOXA3P55318 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.3□□□□□ -2.36
FOXA3P55318 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC0.3□□□□□ -2.36
FOXA3P55318 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC0.3□□□□□ -2.36
FOXA3P55318 AC242498.1-201ENST00000604134 111 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AC243994.1-201ENST00000618627 109 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 AL445523.1-201ENST00000451184 1362 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.3□□□□□ -2.36
FOXA3P55318 AC099786.3-201ENST00000565735 1410 ntBASIC0.3□□□□□ -2.36
FOXA3P55318 RNU6-371P-201ENST00000364283 108 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 RNU6-534P-201ENST00000364877 106 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 SNORD31B-201ENST00000364977 69 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 SNORD116.1-201ENST00000365628 92 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC0.29□□□□□ -2.36
FOXA3P55318 RNU6-418P-201ENST00000384035 107 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 AC060773.1-201ENST00000421698 310 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 AC006366.1-201ENST00000422002 759 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC0.29□□□□□ -2.36
FOXA3P55318 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.29□□□□□ -2.36
FOXA3P55318 MTCO3P18-201ENST00000440206 761 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 AC245047.7-201ENST00000440265 293 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 AC243964.1-201ENST00000441814 261 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 ZNF736P5Y-201ENST00000451173 805 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 AP000797.1-201ENST00000478870 387 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 AC022447.4-201ENST00000504053 364 ntBASIC0.29□□□□□ -2.36
FOXA3P55318 AC091435.1-201ENST00000505442 584 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms