Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.71□□□□□ -1.98
CTCFP49711 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.71□□□□□ -1.98
CTCFP49711 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.71□□□□□ -1.98
CTCFP49711 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.71□□□□□ -1.98
CTCFP49711 MTCO2P30-201ENST00000503662 364 ntBASIC2.71□□□□□ -1.98
CTCFP49711 AC018710.1-201ENST00000506509 158 ntBASIC2.71□□□□□ -1.98
CTCFP49711 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.71□□□□□ -1.98
CTCFP49711 SNORA31.11-201ENST00000516528 139 ntBASIC2.71□□□□□ -1.98
CTCFP49711 RNU6-256P-201ENST00000516747 97 ntBASIC2.71□□□□□ -1.98
CTCFP49711 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC2.71□□□□□ -1.98
CTCFP49711 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.71□□□□□ -1.98
CTCFP49711 AC010186.2-204ENST00000537668 439 ntBASIC2.71□□□□□ -1.98
CTCFP49711 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.71□□□□□ -1.98
CTCFP49711 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.71□□□□□ -1.98
CTCFP49711 MIR3672-201ENST00000584290 82 ntBASIC2.71□□□□□ -1.98
CTCFP49711 AC060766.3-201ENST00000591442 263 ntBASIC2.71□□□□□ -1.98
CTCFP49711 AC009314.1-201ENST00000603871 304 ntBASIC2.71□□□□□ -1.98
CTCFP49711 AL138726.1-201ENST00000614873 333 ntBASIC2.71□□□□□ -1.98
CTCFP49711 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
CTCFP49711 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.71□□□□□ -1.98
CTCFP49711 RNU6-529P-201ENST00000363383 104 ntBASIC2.7□□□□□ -1.98
CTCFP49711 Y_RNA.135-201ENST00000363439 95 ntBASIC2.7□□□□□ -1.98
CTCFP49711 RNU6-128P-201ENST00000383976 107 ntBASIC2.7□□□□□ -1.98
CTCFP49711 RNU6-214P-201ENST00000384130 107 ntBASIC2.7□□□□□ -1.98
CTCFP49711 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.7□□□□□ -1.98
CTCFP49711 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.7□□□□□ -1.98
CTCFP49711 SNAP23P1-201ENST00000433229 246 ntBASIC2.7□□□□□ -1.98
CTCFP49711 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.7□□□□□ -1.98
CTCFP49711 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.7□□□□□ -1.98
CTCFP49711 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.7□□□□□ -1.98
CTCFP49711 RPL39P5-202ENST00000512505 151 ntBASIC2.7□□□□□ -1.98
CTCFP49711 RNU6-864P-201ENST00000516256 108 ntBASIC2.7□□□□□ -1.98
CTCFP49711 AC109329.1-201ENST00000518744 317 ntBASIC2.7□□□□□ -1.98
CTCFP49711 TRAV32-201ENST00000553993 340 ntBASIC2.7□□□□□ -1.98
CTCFP49711 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.7□□□□□ -1.98
CTCFP49711 AC105245.1-201ENST00000581934 244 ntBASIC2.7□□□□□ -1.98
CTCFP49711 AC073410.2-201ENST00000603240 332 ntBASIC2.7□□□□□ -1.98
CTCFP49711 AL137847.3-201ENST00000611521 109 ntBASIC2.7□□□□□ -1.98
CTCFP49711 AL159153.1-201ENST00000619688 317 ntBASIC2.7□□□□□ -1.98
CTCFP49711 AC009248.2-201ENST00000619826 254 ntBASIC2.7□□□□□ -1.98
CTCFP49711 CASC19-280ENST00000642102 1351 ntBASIC2.7□□□□□ -1.98
CTCFP49711 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.69□□□□□ -1.98
CTCFP49711 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.69□□□□□ -1.98
CTCFP49711 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.69□□□□□ -1.98
CTCFP49711 RNA5SP456-201ENST00000364002 114 ntBASIC2.69□□□□□ -1.98
CTCFP49711 RNU1-57P-201ENST00000384491 166 ntBASIC2.69□□□□□ -1.98
CTCFP49711 MIR186-201ENST00000384988 86 ntBASIC2.69□□□□□ -1.98
CTCFP49711 AC008267.5-201ENST00000424928 265 ntBASIC2.69□□□□□ -1.98
CTCFP49711 UBE2V1P4-201ENST00000425374 344 ntBASIC2.69□□□□□ -1.98
CTCFP49711 snoU13.14-201ENST00000459372 104 ntBASIC2.69□□□□□ -1.98
CTCFP49711 RPL30P12-201ENST00000474666 353 ntBASIC2.69□□□□□ -1.98
CTCFP49711 HMGB3P3-201ENST00000510526 400 ntBASIC2.69□□□□□ -1.98
CTCFP49711 RN7SKP256-201ENST00000517201 314 ntBASIC2.69□□□□□ -1.98
CTCFP49711 AP000889.2-201ENST00000532684 490 ntBASIC2.69□□□□□ -1.98
CTCFP49711 AC105137.2-201ENST00000569073 466 ntBASIC2.69□□□□□ -1.98
CTCFP49711 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
CTCFP49711 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CTCFP49711 Y_RNA.72-201ENST00000362894 103 ntBASIC2.68□□□□□ -1.98
CTCFP49711 Y_RNA.390-201ENST00000383932 102 ntBASIC2.68□□□□□ -1.98
CTCFP49711 SNORA32.2-201ENST00000384049 122 ntBASIC2.68□□□□□ -1.98
CTCFP49711 RNY1P14-201ENST00000384426 108 ntBASIC2.68□□□□□ -1.98
CTCFP49711 MIR583-201ENST00000384846 75 ntBASIC2.68□□□□□ -1.98
CTCFP49711 MIR544A-201ENST00000384855 91 ntBASIC2.68□□□□□ -1.98
CTCFP49711 MIR524-201ENST00000385242 87 ntBASIC2.68□□□□□ -1.98
CTCFP49711 RPS15AP10-201ENST00000432472 382 ntBASIC2.68□□□□□ -1.98
CTCFP49711 RPL39P29-201ENST00000447779 157 ntBASIC2.68□□□□□ -1.98
CTCFP49711 AL139109.1-201ENST00000455491 297 ntBASIC2.68□□□□□ -1.98
CTCFP49711 RNU6-1037P-201ENST00000459571 107 ntBASIC2.68□□□□□ -1.98
CTCFP49711 RPL31P58-201ENST00000469001 379 ntBASIC2.68□□□□□ -1.98
CTCFP49711 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.68□□□□□ -1.98
CTCFP49711 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.68□□□□□ -1.98
CTCFP49711 RNU4-49P-201ENST00000516080 140 ntBASIC2.68□□□□□ -1.98
CTCFP49711 AC026371.1-201ENST00000551867 419 ntBASIC2.68□□□□□ -1.98
CTCFP49711 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.68□□□□□ -1.98
CTCFP49711 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.68□□□□□ -1.98
CTCFP49711 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.68□□□□□ -1.98
CTCFP49711 uc_338.15-201ENST00000615470 191 ntBASIC2.68□□□□□ -1.98
CTCFP49711 DUXAP9-208ENST00000622815 614 ntBASIC2.68□□□□□ -1.98
CTCFP49711 AC009033.1-201ENST00000624279 431 ntBASIC2.68□□□□□ -1.98
CTCFP49711 MTND4P23-201ENST00000447723 1363 ntBASIC2.68□□□□□ -1.98
CTCFP49711 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.68□□□□□ -1.98
CTCFP49711 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CTCFP49711 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
CTCFP49711 Y_RNA.212-201ENST00000364177 102 ntBASIC2.67□□□□□ -1.98
CTCFP49711 SNORD32A-201ENST00000364805 84 ntBASIC2.67□□□□□ -1.98
CTCFP49711 RNU6-1222P-201ENST00000384615 107 ntBASIC2.67□□□□□ -1.98
CTCFP49711 MT-TL1-201ENST00000386347 75 ntBASIC2.67□□□□□ -1.98
CTCFP49711 SNORA11.4-201ENST00000408823 129 ntBASIC2.67□□□□□ -1.98
CTCFP49711 RNU6-1245P-201ENST00000411130 106 ntBASIC2.67□□□□□ -1.98
CTCFP49711 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.67□□□□□ -1.98
CTCFP49711 CYCSP48-201ENST00000417124 323 ntBASIC2.67□□□□□ -1.98
CTCFP49711 AIMP1P2-201ENST00000425294 312 ntBASIC2.67□□□□□ -1.98
CTCFP49711 AL031659.1-201ENST00000447075 539 ntBASIC2.67□□□□□ -1.98
CTCFP49711 AMD1P1-201ENST00000457220 922 ntBASIC2.67□□□□□ -1.98
CTCFP49711 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.67□□□□□ -1.98
CTCFP49711 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.67□□□□□ -1.98
CTCFP49711 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.67□□□□□ -1.98
CTCFP49711 SCOCP1-201ENST00000554676 349 ntBASIC2.67□□□□□ -1.98
CTCFP49711 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.67□□□□□ -1.98
CTCFP49711 MIR5694-201ENST00000581190 76 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms