Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.39□□□□□ -2.03
MSH3P20585 AC021269.2-201ENST00000532318 330 ntBASIC2.39□□□□□ -2.03
MSH3P20585 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.39□□□□□ -2.03
MSH3P20585 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.39□□□□□ -2.03
MSH3P20585 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.39□□□□□ -2.03
MSH3P20585 AL050343.2-201ENST00000607338 280 ntBASIC2.39□□□□□ -2.03
MSH3P20585 AC009229.3-201ENST00000608056 282 ntBASIC2.39□□□□□ -2.03
MSH3P20585 AL137847.3-201ENST00000611521 109 ntBASIC2.39□□□□□ -2.03
MSH3P20585 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.39□□□□□ -2.03
MSH3P20585 AC243829.7-201ENST00000633081 225 ntBASIC2.39□□□□□ -2.03
MSH3P20585 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.39□□□□□ -2.03
MSH3P20585 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.39□□□□□ -2.03
MSH3P20585 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.38□□□□□ -2.03
MSH3P20585 Z82209.1-201ENST00000422141 2135 ntBASIC2.38□□□□□ -2.03
MSH3P20585 Y_RNA.404-201ENST00000383978 102 ntBASIC2.38□□□□□ -2.03
MSH3P20585 Y_RNA.500-201ENST00000384466 111 ntBASIC2.38□□□□□ -2.03
MSH3P20585 MIR544A-201ENST00000384855 91 ntBASIC2.38□□□□□ -2.03
MSH3P20585 RNY4P36-201ENST00000391116 96 ntBASIC2.38□□□□□ -2.03
MSH3P20585 MTCYBP4-201ENST00000401524 249 ntBASIC2.38□□□□□ -2.03
MSH3P20585 MTND4P28-201ENST00000426217 387 ntBASIC2.38□□□□□ -2.03
MSH3P20585 Z82205.1-201ENST00000428456 297 ntBASIC2.38□□□□□ -2.03
MSH3P20585 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.38□□□□□ -2.03
MSH3P20585 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.38□□□□□ -2.03
MSH3P20585 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.38□□□□□ -2.03
MSH3P20585 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.38□□□□□ -2.03
MSH3P20585 AC026436.1-201ENST00000510537 270 ntBASIC2.38□□□□□ -2.03
MSH3P20585 ACA59.1-201ENST00000515966 143 ntBASIC2.38□□□□□ -2.03
MSH3P20585 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.38□□□□□ -2.03
MSH3P20585 RPS15AP11-201ENST00000594193 385 ntBASIC2.38□□□□□ -2.03
MSH3P20585 AC073544.1-201ENST00000600110 1595 ntBASIC2.38□□□□□ -2.03
MSH3P20585 AL109809.4-201ENST00000603520 2185 ntBASIC2.38□□□□□ -2.03
MSH3P20585 AL356157.2-201ENST00000605122 111 ntBASIC2.38□□□□□ -2.03
MSH3P20585 AC126177.8-201ENST00000618339 1015 ntBASIC2.38□□□□□ -2.03
MSH3P20585 AL669831.3-213ENST00000636676 183 ntBASIC2.38□□□□□ -2.03
MSH3P20585 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.37□□□□□ -2.03
MSH3P20585 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.37□□□□□ -2.03
MSH3P20585 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.37□□□□□ -2.03
MSH3P20585 RNU6-1010P-201ENST00000362757 107 ntBASIC2.37□□□□□ -2.03
MSH3P20585 RNU6-1083P-201ENST00000384022 107 ntBASIC2.37□□□□□ -2.03
MSH3P20585 RNU6-43P-201ENST00000384302 107 ntBASIC2.37□□□□□ -2.03
MSH3P20585 RNU6-1222P-201ENST00000384615 107 ntBASIC2.37□□□□□ -2.03
MSH3P20585 RNU6-310P-201ENST00000384655 107 ntBASIC2.37□□□□□ -2.03
MSH3P20585 RNU6-1140P-201ENST00000410517 106 ntBASIC2.37□□□□□ -2.03
MSH3P20585 Y_RNA.646-201ENST00000410980 101 ntBASIC2.37□□□□□ -2.03
MSH3P20585 MTCO2P27-201ENST00000420740 428 ntBASIC2.37□□□□□ -2.03
MSH3P20585 RPL23AP95-201ENST00000426806 265 ntBASIC2.37□□□□□ -2.03
MSH3P20585 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.37□□□□□ -2.03
MSH3P20585 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.37□□□□□ -2.03
MSH3P20585 RPL39P29-201ENST00000447779 157 ntBASIC2.37□□□□□ -2.03
MSH3P20585 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.37□□□□□ -2.03
MSH3P20585 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.37□□□□□ -2.03
MSH3P20585 RPL7P42-201ENST00000481005 679 ntBASIC2.37□□□□□ -2.03
MSH3P20585 AC234781.5-201ENST00000508429 271 ntBASIC2.37□□□□□ -2.03
MSH3P20585 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.37□□□□□ -2.03
MSH3P20585 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.37□□□□□ -2.03
MSH3P20585 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.37□□□□□ -2.03
MSH3P20585 AC079598.5-201ENST00000547460 117 ntBASIC2.37□□□□□ -2.03
MSH3P20585 MYL12BP1-201ENST00000569826 507 ntBASIC2.37□□□□□ -2.03
MSH3P20585 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.37□□□□□ -2.03
MSH3P20585 AL133255.1-201ENST00000606374 441 ntBASIC2.37□□□□□ -2.03
MSH3P20585 AC096772.1-201ENST00000609146 564 ntBASIC2.37□□□□□ -2.03
MSH3P20585 PISRT1.1-201ENST00000616930 107 ntBASIC2.37□□□□□ -2.03
MSH3P20585 MIR1291-201ENST00000627649 87 ntBASIC2.37□□□□□ -2.03
MSH3P20585 IGHVIII-44-202ENST00000636235 289 ntBASIC2.37□□□□□ -2.03
MSH3P20585 AC069528.2-201ENST00000624849 1991 ntBASIC2.37□□□□□ -2.03
MSH3P20585 AC007336.1-201ENST00000576365 3828 ntBASIC2.37□□□□□ -2.03
MSH3P20585 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
MSH3P20585 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.36□□□□□ -2.03
MSH3P20585 Y_RNA.419-201ENST00000384041 102 ntBASIC2.36□□□□□ -2.03
MSH3P20585 RNU6-784P-201ENST00000384330 106 ntBASIC2.36□□□□□ -2.03
MSH3P20585 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
MSH3P20585 BTF3L4P2-201ENST00000392798 346 ntBASIC2.36□□□□□ -2.03
MSH3P20585 AL591034.2-201ENST00000402839 359 ntBASIC2.36□□□□□ -2.03
MSH3P20585 RPS20P15-201ENST00000412792 311 ntBASIC2.36□□□□□ -2.03
MSH3P20585 AC009963.1-201ENST00000417265 157 ntBASIC2.36□□□□□ -2.03
MSH3P20585 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.36□□□□□ -2.03
MSH3P20585 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.36□□□□□ -2.03
MSH3P20585 ELOCP24-201ENST00000456370 334 ntBASIC2.36□□□□□ -2.03
MSH3P20585 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.36□□□□□ -2.03
MSH3P20585 RNU7-152P-201ENST00000458982 64 ntBASIC2.36□□□□□ -2.03
MSH3P20585 Y_RNA.653-201ENST00000459091 95 ntBASIC2.36□□□□□ -2.03
MSH3P20585 SNORA59A-201ENST00000459326 152 ntBASIC2.36□□□□□ -2.03
MSH3P20585 RPL30P12-201ENST00000474666 353 ntBASIC2.36□□□□□ -2.03
MSH3P20585 RN7SL636P-201ENST00000497504 294 ntBASIC2.36□□□□□ -2.03
MSH3P20585 AC097473.1-201ENST00000508142 408 ntBASIC2.36□□□□□ -2.03
MSH3P20585 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.36□□□□□ -2.03
MSH3P20585 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.36□□□□□ -2.03
MSH3P20585 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.36□□□□□ -2.03
MSH3P20585 AL356280.1-201ENST00000603614 379 ntBASIC2.36□□□□□ -2.03
MSH3P20585 AC084781.2-201ENST00000615568 161 ntBASIC2.36□□□□□ -2.03
MSH3P20585 AC090574.1-201ENST00000623186 233 ntBASIC2.36□□□□□ -2.03
MSH3P20585 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.36□□□□□ -2.03
MSH3P20585 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.36□□□□□ -2.03
MSH3P20585 AC016717.2-201ENST00000609089 5141 ntBASIC2.36□□□□□ -2.03
MSH3P20585 AC080128.1-201ENST00000474389 1917 ntBASIC2.36□□□□□ -2.03
MSH3P20585 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.36□□□□□ -2.03
MSH3P20585 AC010329.5-201ENST00000623497 2174 ntBASIC2.36□□□□□ -2.03
MSH3P20585 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.35□□□□□ -2.03
MSH3P20585 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.35□□□□□ -2.03
MSH3P20585 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms