Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HMGB1P09429 AC062016.1-201ENST00000355719 319 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 RNU6-968P-201ENST00000384076 107 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
HMGB1P09429 RNU2-52P-201ENST00000410680 190 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 AC139712.2-201ENST00000424302 339 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 MTND3P21-201ENST00000433774 331 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 NDUFA5P4-201ENST00000436704 385 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 AL035666.1-201ENST00000446195 348 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 TOMM22P6-201ENST00000465035 409 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 RPS23P5-201ENST00000495419 428 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.99□□□□□ -1.93
HMGB1P09429 MRPS36P4-201ENST00000534436 298 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 AL109918.3-201ENST00000603072 338 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 RMST_3.1-201ENST00000611651 109 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.99□□□□□ -1.93
HMGB1P09429 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HMGB1P09429 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HMGB1P09429 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HMGB1P09429 RNU6-451P-201ENST00000362921 107 ntBASIC2.98□□□□□ -1.93
HMGB1P09429 RNU4-40P-201ENST00000364351 143 ntBASIC2.98□□□□□ -1.93
HMGB1P09429 SNORA18.2-201ENST00000383865 132 ntBASIC2.98□□□□□ -1.93
HMGB1P09429 RNU6-332P-201ENST00000391193 108 ntBASIC2.98□□□□□ -1.93
HMGB1P09429 RNA5SP184-201ENST00000411071 108 ntBASIC2.98□□□□□ -1.93
HMGB1P09429 AC027124.2-201ENST00000428249 105 ntBASIC2.98□□□□□ -1.93
HMGB1P09429 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.98□□□□□ -1.93
HMGB1P09429 AC010486.1-201ENST00000511793 424 ntBASIC2.98□□□□□ -1.93
HMGB1P09429 RNA5SP356-201ENST00000515972 94 ntBASIC2.98□□□□□ -1.93
HMGB1P09429 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.98□□□□□ -1.93
HMGB1P09429 AC109635.3-201ENST00000529536 185 ntBASIC2.98□□□□□ -1.93
HMGB1P09429 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.98□□□□□ -1.93
HMGB1P09429 AL365361.1-201ENST00000566942 3481 ntBASIC2.98□□□□□ -1.93
HMGB1P09429 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
HMGB1P09429 SNORD113-7-201ENST00000363762 77 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 Y_RNA.402-201ENST00000383972 102 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 RNU6-790P-201ENST00000384479 105 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 SNORA80E-201ENST00000384744 137 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 MIR181A1-201ENST00000385026 110 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
HMGB1P09429 AC007547.1-201ENST00000462177 490 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 AC096745.1-201ENST00000509945 370 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 AC016957.1-201ENST00000534895 309 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 AC016256.1-201ENST00000547971 354 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 MIR4319-201ENST00000577285 85 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 MIR3169-201ENST00000578032 83 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 AL096840.1-201ENST00000603287 93 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 MIR3976-201ENST00000606807 139 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 U4.3-201ENST00000621047 82 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 AC091932.3-201ENST00000624223 323 ntBASIC2.97□□□□□ -1.93
HMGB1P09429 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.97□□□□□ -1.93
HMGB1P09429 RNU6-128P-201ENST00000383976 107 ntBASIC2.96□□□□□ -1.94
HMGB1P09429 HMGN2P26-201ENST00000463169 339 ntBASIC2.96□□□□□ -1.94
HMGB1P09429 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HMGB1P09429 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.96□□□□□ -1.94
HMGB1P09429 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.96□□□□□ -1.94
HMGB1P09429 AC006023.1-201ENST00000603944 259 ntBASIC2.96□□□□□ -1.94
HMGB1P09429 AC104458.1-201ENST00000608243 463 ntBASIC2.96□□□□□ -1.94
HMGB1P09429 MIR8076-201ENST00000611401 83 ntBASIC2.96□□□□□ -1.94
HMGB1P09429 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.96□□□□□ -1.94
HMGB1P09429 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.95□□□□□ -1.94
HMGB1P09429 Y_RNA.256-201ENST00000364594 104 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 DEFA7P-201ENST00000382676 285 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 RNU6-1286P-201ENST00000383871 107 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 SNORA12.2-201ENST00000391040 156 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 VN1R36P-201ENST00000414936 291 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 USP9YP28-201ENST00000435142 589 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 AL353705.4-201ENST00000449661 238 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 RNU7-187P-201ENST00000458985 68 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 AC130509.1-201ENST00000464158 433 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.95□□□□□ -1.94
HMGB1P09429 RN7SKP24-201ENST00000515888 284 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 RNVU1-2-201ENST00000516326 135 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 AP005639.2-201ENST00000527592 928 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.95□□□□□ -1.94
HMGB1P09429 AL356575.1-201ENST00000603008 283 ntBASIC2.95□□□□□ -1.94
HMGB1P09429 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.94□□□□□ -1.94
HMGB1P09429 MIR6073-201ENST00000352083 89 ntBASIC2.94□□□□□ -1.94
HMGB1P09429 Y_RNA.9-201ENST00000362354 101 ntBASIC2.94□□□□□ -1.94
HMGB1P09429 SNORD31B-201ENST00000364977 69 ntBASIC2.94□□□□□ -1.94
HMGB1P09429 Y_RNA.554-201ENST00000384672 102 ntBASIC2.94□□□□□ -1.94
HMGB1P09429 MIR196B-201ENST00000384852 84 ntBASIC2.94□□□□□ -1.94
HMGB1P09429 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
HMGB1P09429 RNU2-40P-201ENST00000410833 196 ntBASIC2.94□□□□□ -1.94
HMGB1P09429 Z82205.1-201ENST00000428456 297 ntBASIC2.94□□□□□ -1.94
HMGB1P09429 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.94□□□□□ -1.94
HMGB1P09429 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.94□□□□□ -1.94
HMGB1P09429 RPL17P51-201ENST00000605218 238 ntBASIC2.94□□□□□ -1.94
HMGB1P09429 AC024614.3-201ENST00000637860 256 ntBASIC2.94□□□□□ -1.94
HMGB1P09429 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HMGB1P09429 SNORA41-201ENST00000384675 132 ntBASIC2.93□□□□□ -1.94
HMGB1P09429 SRIP2-201ENST00000428470 166 ntBASIC2.93□□□□□ -1.94
HMGB1P09429 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.93□□□□□ -1.94
HMGB1P09429 RNA5SP320-201ENST00000516263 124 ntBASIC2.93□□□□□ -1.94
HMGB1P09429 AC087441.2-201ENST00000529141 262 ntBASIC2.93□□□□□ -1.94
HMGB1P09429 CPDP1-201ENST00000579660 283 ntBASIC2.93□□□□□ -1.94
HMGB1P09429 FGF7P1-201ENST00000582820 288 ntBASIC2.93□□□□□ -1.94
HMGB1P09429 AC007336.1-201ENST00000576365 3828 ntBASIC2.93□□□□□ -1.94
HMGB1P09429 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HMGB1P09429 CBX3P1-201ENST00000325243 554 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms