Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC-0.16□□□□□ -2.44
HMGN4O00479 SNRPGP12-201ENST00000449481 213 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 AC022364.2-201ENST00000457963 554 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 MTCO3P42-201ENST00000509488 518 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.16□□□□□ -2.44
HMGN4O00479 MTCO3P39-201ENST00000514812 518 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 RNU6-1110P-201ENST00000516462 101 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 RNU6-1315P-201ENST00000517187 99 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 TPRKBP2-201ENST00000565969 475 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 SNORA59B-202ENST00000578183 701 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC-0.16□□□□□ -2.44
HMGN4O00479 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC-0.16□□□□□ -2.44
HMGN4O00479 AC018889.1-201ENST00000605372 397 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 AL353149.1-201ENST00000610667 244 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 AC091925.1-201ENST00000623204 462 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 AC104985.3-201ENST00000623479 597 ntBASIC-0.16□□□□□ -2.44
HMGN4O00479 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC-0.17□□□□□ -2.44
HMGN4O00479 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC-0.17□□□□□ -2.44
HMGN4O00479 Y_RNA.534-201ENST00000384599 112 ntBASIC-0.17□□□□□ -2.44
HMGN4O00479 SNORD41-201ENST00000386967 70 ntBASIC-0.17□□□□□ -2.44
HMGN4O00479 RNU6ATAC33P-201ENST00000408647 126 ntBASIC-0.17□□□□□ -2.44
HMGN4O00479 AL359704.1-201ENST00000411586 781 ntBASIC-0.17□□□□□ -2.44
HMGN4O00479 BTF3L4P1-201ENST00000413813 468 ntBASIC-0.17□□□□□ -2.44
HMGN4O00479 MTND2P20-201ENST00000440805 661 ntBASIC-0.17□□□□□ -2.44
HMGN4O00479 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC-0.17□□□□□ -2.44
HMGN4O00479 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC-0.17□□□□□ -2.44
HMGN4O00479 AL122001.1-201ENST00000457027 370 ntBASIC-0.17□□□□□ -2.44
HMGN4O00479 AC121161.1-201ENST00000510606 652 ntBASIC-0.17□□□□□ -2.44
HMGN4O00479 AC011406.1-201ENST00000512440 370 ntBASIC-0.17□□□□□ -2.44
HMGN4O00479 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC-0.17□□□□□ -2.44
HMGN4O00479 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.17□□□□□ -2.44
HMGN4O00479 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC-0.17□□□□□ -2.44
HMGN4O00479 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC-0.17□□□□□ -2.44
HMGN4O00479 AL929325.1-201ENST00000603096 117 ntBASIC-0.17□□□□□ -2.44
HMGN4O00479 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC-0.18□□□□□ -2.44
HMGN4O00479 SNORD114-9-201ENST00000364370 72 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 SNORA72.2-201ENST00000365028 127 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 RNY1P4-201ENST00000384595 115 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 AL355796.1-201ENST00000406706 323 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 AL034345.1-201ENST00000407768 123 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 BX664727.1-201ENST00000416024 466 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 RPL23AP50-201ENST00000434149 455 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC-0.18□□□□□ -2.44
HMGN4O00479 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC-0.18□□□□□ -2.44
HMGN4O00479 RPL39P39-201ENST00000455840 151 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 SRRM1P2-201ENST00000464531 1192 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 AP000797.1-201ENST00000478870 387 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 AC021146.8-201ENST00000507455 733 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 KRTAP13-6P-201ENST00000508999 371 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC-0.18□□□□□ -2.44
HMGN4O00479 AC023632.1-201ENST00000518463 375 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 AC016256.1-201ENST00000547971 354 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC-0.18□□□□□ -2.44
HMGN4O00479 AL157871.3-201ENST00000557231 293 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 MIR1273C-201ENST00000578669 77 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC-0.18□□□□□ -2.44
HMGN4O00479 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC-0.18□□□□□ -2.44
HMGN4O00479 MIR5190-201ENST00000581537 80 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 SNRPGP20-201ENST00000604477 205 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 AC005332.6-201ENST00000613178 446 ntBASIC-0.18□□□□□ -2.44
HMGN4O00479 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC-0.18□□□□□ -2.44
HMGN4O00479 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC-0.19□□□□□ -2.44
HMGN4O00479 Y_RNA.33-201ENST00000362591 102 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 RNU4-15P-201ENST00000362613 141 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 SNORA42.1-201ENST00000363515 137 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 SNORA4.3-201ENST00000365564 137 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 RNU6-793P-201ENST00000384233 104 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 RNU6-1031P-201ENST00000384773 107 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AL079342.2-201ENST00000403367 482 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 RNU6-177P-201ENST00000411257 104 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.19□□□□□ -2.44
HMGN4O00479 AC060773.1-201ENST00000421698 310 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC-0.19□□□□□ -2.44
HMGN4O00479 MTND4LP14-201ENST00000429447 288 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 RPL31P35-201ENST00000431058 377 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC-0.19□□□□□ -2.44
HMGN4O00479 ART2BP-201ENST00000453501 499 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AL583843.1-201ENST00000456070 346 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC-0.19□□□□□ -2.44
HMGN4O00479 snoU109.2-201ENST00000459316 135 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AC010531.2-201ENST00000465012 153 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AC104563.1-201ENST00000476147 376 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC-0.19□□□□□ -2.44
HMGN4O00479 NAF1-205ENST00000509434 385 ntTSL 3 BASIC-0.19□□□□□ -2.44
HMGN4O00479 MTND1P22-201ENST00000510572 951 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AC092436.3-201ENST00000511788 257 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 RNA5SP227-201ENST00000516184 113 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC-0.19□□□□□ -2.44
HMGN4O00479 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC-0.19□□□□□ -2.44
HMGN4O00479 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC-0.19□□□□□ -2.44
HMGN4O00479 MIR4290-201ENST00000583807 95 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AL357312.1-201ENST00000603879 298 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 AL157786.1-207ENST00000627771 695 ntBASIC-0.19□□□□□ -2.44
HMGN4O00479 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC-0.19□□□□□ -2.44
HMGN4O00479 MIR330-201ENST00000362196 94 ntBASIC-0.2□□□□□ -2.44
HMGN4O00479 RNU6-1284P-201ENST00000363701 100 ntBASIC-0.2□□□□□ -2.44
HMGN4O00479 Y_RNA.269-201ENST00000364685 89 ntBASIC-0.2□□□□□ -2.44
HMGN4O00479 SNORD31B-201ENST00000364977 69 ntBASIC-0.2□□□□□ -2.44
HMGN4O00479 Y_RNA.508-201ENST00000384502 114 ntBASIC-0.2□□□□□ -2.44
HMGN4O00479 MIR653-201ENST00000385279 96 ntBASIC-0.2□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms