Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC012308.1-201ENST00000451232 178 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC092634.7-201ENST00000621022 103 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 RNU6-858P-201ENST00000362436 107 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 Y_RNA.48-201ENST00000362710 103 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 RNU6-655P-201ENST00000362858 107 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 SNORA25.3-201ENST00000363205 127 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 MIR106A-201ENST00000384870 81 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 MIR224-201ENST00000384889 81 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AL357139.1-201ENST00000407792 426 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 RNA5SP504-201ENST00000410676 117 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 MTCYBP15-201ENST00000433123 1127 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC023194.1-201ENST00000493084 308 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC009646.1-201ENST00000510455 318 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC116347.2-201ENST00000514912 523 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 RNU6-390P-201ENST00000516259 103 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 SNORA40.12-201ENST00000516329 111 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 RNU6-1110P-201ENST00000516462 101 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AL592221.1-201ENST00000605266 382 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC004009.2-201ENST00000623016 728 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC107982.1-201ENST00000507171 1300 ntBASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 SNORD118-201ENST00000363593 134 ntBASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 MIR643-201ENST00000385267 97 ntBASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 SNORA75.2-201ENST00000391138 150 ntBASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 RNU6-952P-201ENST00000391164 108 ntBASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 SNORA75.3-201ENST00000391231 150 ntBASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 AC019178.2-201ENST00000423595 505 ntBASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 AL353752.1-201ENST00000454946 260 ntBASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 RNU7-34P-201ENST00000459394 64 ntBASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 AC138749.5-201ENST00000611461 208 ntBASIC-0.49□□□□□ -2.49
CCDC88BA6NC98 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 RNU6-1010P-201ENST00000362757 107 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 RNU6-1167P-201ENST00000363227 94 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 RNU6-674P-201ENST00000363831 107 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 MIR525-201ENST00000384978 85 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 MIR29B2-201ENST00000385055 81 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 MTCO3P1-205ENST00000422088 832 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 AC104332.1-201ENST00000440471 797 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 RPL32P14-201ENST00000463196 378 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 KRTAP13-6P-201ENST00000508999 371 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 AC023157.2-201ENST00000540596 141 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 AC078795.2-201ENST00000602835 1252 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 AC011451.2-201ENST00000604303 598 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 PRELID3BP2-201ENST00000605362 201 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 MIR8064-201ENST00000612863 90 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 AL118556.2-201ENST00000614375 824 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 AC078938.1-201ENST00000620993 318 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 AC106754.2-201ENST00000623006 233 ntBASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC-0.5□□□□□ -2.49
CCDC88BA6NC98 Y_RNA.330-201ENST00000365230 109 ntBASIC-0.51□□□□□ -2.49
CCDC88BA6NC98 Y_RNA.332-201ENST00000365271 113 ntBASIC-0.51□□□□□ -2.49
CCDC88BA6NC98 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC-0.51□□□□□ -2.49
CCDC88BA6NC98 CBX3P9-201ENST00000402326 552 ntBASIC-0.51□□□□□ -2.49
CCDC88BA6NC98 RNU6-177P-201ENST00000411257 104 ntBASIC-0.51□□□□□ -2.49
CCDC88BA6NC98 VPS26BP1-201ENST00000417155 755 ntBASIC-0.51□□□□□ -2.49
CCDC88BA6NC98 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC-0.51□□□□□ -2.49
CCDC88BA6NC98 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC-0.51□□□□□ -2.49
CCDC88BA6NC98 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC-0.51□□□□□ -2.49
CCDC88BA6NC98 RNU6-863P-201ENST00000515989 104 ntBASIC-0.51□□□□□ -2.49
CCDC88BA6NC98 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC-0.51□□□□□ -2.49
CCDC88BA6NC98 RNU6-679P-201ENST00000391003 106 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 ARL5AP1-201ENST00000418991 388 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 ELOCP30-201ENST00000447108 299 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 MTND3P4-201ENST00000453537 303 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 SUB1P2-201ENST00000556401 297 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 AC023827.1-201ENST00000569247 97 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 MIR4782-201ENST00000577987 79 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 AC080078.2-201ENST00000603766 501 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 AL358072.1-201ENST00000604156 575 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 AC016252.1-201ENST00000609721 474 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 AC136475.10-201ENST00000620253 385 ntBASIC-0.52□□□□□ -2.49
CCDC88BA6NC98 RNA5SP275-201ENST00000363936 118 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 SNORA32.3-201ENST00000384772 121 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 MIR593-201ENST00000384856 100 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 MIR610-201ENST00000385139 96 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 GTF2IP3-201ENST00000433887 494 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 AL162725.1-201ENST00000435405 301 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 MTCO3P45-201ENST00000443036 613 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 SNORD60.2-201ENST00000516883 86 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 RPL23AP91-201ENST00000569211 455 ntBASIC-0.53□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 137.3 ms