Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Smco4Q9JIS3 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Smco4Q9JIS3 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Smco4Q9JIS3 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Smad6-203ENSMUST00000179458 273 ntBASIC13.03□□□□□ -0.32
Smco4Q9JIS3 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Sorbs3-204ENSMUST00000227929 2460 ntBASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Smco4Q9JIS3 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Smco4Q9JIS3 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC13.02□□□□□ -0.32
Smco4Q9JIS3 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Smco4Q9JIS3 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Smco4Q9JIS3 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Smco4Q9JIS3 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Smco4Q9JIS3 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Smco4Q9JIS3 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Smco4Q9JIS3 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Gm5812-201ENSMUST00000061073 957 ntBASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smco4Q9JIS3 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Gm43137-201ENSMUST00000198052 594 ntBASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smco4Q9JIS3 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smco4Q9JIS3 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smco4Q9JIS3 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC13□□□□□ -0.33
Smco4Q9JIS3 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC13□□□□□ -0.33
Smco4Q9JIS3 Gm44729-201ENSMUST00000206759 2052 ntBASIC13□□□□□ -0.33
Smco4Q9JIS3 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smco4Q9JIS3 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Smco4Q9JIS3 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smco4Q9JIS3 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Smco4Q9JIS3 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Smco4Q9JIS3 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms