Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CACNA1AO00555 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CACNA1AO00555 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.88■□□□□ 0.45
CACNA1AO00555 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CACNA1AO00555 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CACNA1AO00555 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.88■□□□□ 0.45
CACNA1AO00555 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.88■□□□□ 0.45
CACNA1AO00555 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.88■□□□□ 0.45
CACNA1AO00555 GPR32P1-201ENST00000601788 811 ntBASIC17.88■□□□□ 0.45
CACNA1AO00555 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.87■□□□□ 0.45
CACNA1AO00555 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.87■□□□□ 0.45
CACNA1AO00555 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CACNA1AO00555 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.87■□□□□ 0.45
CACNA1AO00555 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CACNA1AO00555 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CACNA1AO00555 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.87■□□□□ 0.45
CACNA1AO00555 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CACNA1AO00555 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.87■□□□□ 0.45
CACNA1AO00555 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.87■□□□□ 0.45
CACNA1AO00555 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CACNA1AO00555 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.87■□□□□ 0.45
CACNA1AO00555 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CACNA1AO00555 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.87■□□□□ 0.45
CACNA1AO00555 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.87■□□□□ 0.45
CACNA1AO00555 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.87■□□□□ 0.45
CACNA1AO00555 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.87■□□□□ 0.45
CACNA1AO00555 IGHV3-41-201ENST00000613121 348 ntBASIC17.87■□□□□ 0.45
CACNA1AO00555 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1AO00555 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1AO00555 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.86■□□□□ 0.45
CACNA1AO00555 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1AO00555 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1AO00555 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1AO00555 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.86■□□□□ 0.45
CACNA1AO00555 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1AO00555 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1AO00555 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1AO00555 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.86■□□□□ 0.45
CACNA1AO00555 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1AO00555 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1AO00555 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.86■□□□□ 0.45
CACNA1AO00555 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.86■□□□□ 0.45
CACNA1AO00555 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.86■□□□□ 0.45
CACNA1AO00555 UNC93B6-202ENST00000528242 690 ntBASIC17.86■□□□□ 0.45
CACNA1AO00555 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CACNA1AO00555 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1AO00555 AC002310.6-201ENST00000624451 1377 ntBASIC17.85■□□□□ 0.45
CACNA1AO00555 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1AO00555 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1AO00555 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CACNA1AO00555 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1AO00555 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1AO00555 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1AO00555 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
CACNA1AO00555 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1AO00555 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.85■□□□□ 0.45
CACNA1AO00555 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.85■□□□□ 0.45
CACNA1AO00555 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1AO00555 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.85■□□□□ 0.45
CACNA1AO00555 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.85■□□□□ 0.45
CACNA1AO00555 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CACNA1AO00555 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CACNA1AO00555 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1AO00555 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1AO00555 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CACNA1AO00555 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1AO00555 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1AO00555 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.84■□□□□ 0.45
CACNA1AO00555 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.84■□□□□ 0.45
CACNA1AO00555 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.84■□□□□ 0.45
CACNA1AO00555 AC093512.1-201ENST00000617969 520 ntBASIC17.84■□□□□ 0.45
CACNA1AO00555 SNX12-206ENST00000622259 661 ntTSL 5 BASIC17.84■□□□□ 0.45
CACNA1AO00555 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1AO00555 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1AO00555 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC17.84■□□□□ 0.45
CACNA1AO00555 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1AO00555 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1AO00555 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.84■□□□□ 0.45
CACNA1AO00555 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.84■□□□□ 0.45
CACNA1AO00555 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.84■□□□□ 0.45
CACNA1AO00555 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
CACNA1AO00555 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1AO00555 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1AO00555 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1AO00555 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.84■□□□□ 0.45
CACNA1AO00555 AL162377.1-201ENST00000618844 1793 ntBASIC17.84■□□□□ 0.45
CACNA1AO00555 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1AO00555 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CACNA1AO00555 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms