Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MTND4P19-201ENST00000446659 478 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 AL118496.2-201ENST00000448300 230 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS4AQ9UN37 RPL30P10-201ENST00000488148 337 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 RN7SL20P-201ENST00000488827 297 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 RN7SL633P-201ENST00000488974 297 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 RPS27P26-201ENST00000494583 239 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 AC091874.1-201ENST00000511402 339 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 RN7SKP295-201ENST00000517264 153 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS4AQ9UN37 GTF3AP2-201ENST00000557014 266 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS4AQ9UN37 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS4AQ9UN37 HMGB1P24-202ENST00000615653 685 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 SNORA43.4-201ENST00000629559 138 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS4AQ9UN37 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
VPS4AQ9UN37 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VPS4AQ9UN37 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS4AQ9UN37 Y_RNA.123-201ENST00000363338 102 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 RNU1-105P-201ENST00000363470 161 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 Y_RNA.148-201ENST00000363557 117 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 SNORA7.4-201ENST00000384249 137 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 RNY1P14-201ENST00000384426 108 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 EEF1A1P41-201ENST00000414667 207 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 MCFD2P1-201ENST00000417812 300 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS4AQ9UN37 AC099799.1-201ENST00000439809 192 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.89□□□□□ -1.95
VPS4AQ9UN37 AL513124.1-201ENST00000450410 614 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.89□□□□□ -1.95
VPS4AQ9UN37 RNU6-264P-201ENST00000517134 104 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.89□□□□□ -1.95
VPS4AQ9UN37 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.89□□□□□ -1.95
VPS4AQ9UN37 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS4AQ9UN37 RPL23AP78-201ENST00000599928 470 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 AC005034.5-201ENST00000604219 466 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS4AQ9UN37 AL450472.1-202ENST00000637286 180 ntBASIC2.89□□□□□ -1.95
VPS4AQ9UN37 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS4AQ9UN37 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 RNU6-1010P-201ENST00000362757 107 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 SNORA63C-201ENST00000364578 129 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 RNU6-1286P-201ENST00000383871 107 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 Y_RNA.422-201ENST00000384054 114 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 RNU6-738P-201ENST00000384531 106 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 MIR544A-201ENST00000384855 91 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 RNU6-308P-201ENST00000390957 107 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 SNORA26.3-201ENST00000391119 136 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 RPL21P75-201ENST00000396599 483 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 RPL21P28-201ENST00000401418 483 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AL139095.1-201ENST00000404326 391 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 RNU6-1245P-201ENST00000411130 106 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 EIF1AXP1-201ENST00000419267 435 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 MRPS18CP6-201ENST00000423587 223 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AC009414.1-201ENST00000427200 443 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AC078809.1-201ENST00000427601 140 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 OSTCP8-201ENST00000445117 448 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 RPL21P39-201ENST00000463605 483 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AC087190.1-201ENST00000484462 480 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AC093591.1-201ENST00000491435 481 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 RPL21P16-201ENST00000495531 483 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AC109329.1-201ENST00000518744 317 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 RNU6-988P-201ENST00000519081 107 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 MIR5571-201ENST00000577998 113 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 uc_338.14-201ENST00000613162 166 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AC110079.1-202ENST00000635213 138 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 MIR6733-201ENST00000635723 61 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 MIR622-201ENST00000638396 96 ntBASIC2.88□□□□□ -1.95
VPS4AQ9UN37 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
VPS4AQ9UN37 AP000560.1-201ENST00000624150 1937 ntBASIC2.87□□□□□ -1.95
VPS4AQ9UN37 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS4AQ9UN37 AC009541.1-201ENST00000438279 2662 ntBASIC2.87□□□□□ -1.95
VPS4AQ9UN37 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
VPS4AQ9UN37 snosnR66.1-201ENST00000391095 99 ntBASIC2.87□□□□□ -1.95
VPS4AQ9UN37 RNA5SP508-201ENST00000411327 119 ntBASIC2.87□□□□□ -1.95
VPS4AQ9UN37 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.87□□□□□ -1.95
VPS4AQ9UN37 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS4AQ9UN37 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS4AQ9UN37 snoU13.14-201ENST00000459372 104 ntBASIC2.87□□□□□ -1.95
VPS4AQ9UN37 RNA5SP367-201ENST00000516557 118 ntBASIC2.87□□□□□ -1.95
VPS4AQ9UN37 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS4AQ9UN37 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS4AQ9UN37 AC104581.2-201ENST00000572227 430 ntBASIC2.87□□□□□ -1.95
VPS4AQ9UN37 UBL5P2-201ENST00000583788 219 ntBASIC2.87□□□□□ -1.95
VPS4AQ9UN37 RPS15AP11-201ENST00000594193 385 ntBASIC2.87□□□□□ -1.95
VPS4AQ9UN37 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS4AQ9UN37 AC138305.3-201ENST00000624988 240 ntBASIC2.87□□□□□ -1.95
VPS4AQ9UN37 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms