Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS28Q9UK41 AC104564.1-201ENST00000493028 407 ntBASIC2.39□□□□□ -2.03
VPS28Q9UK41 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.39□□□□□ -2.03
VPS28Q9UK41 TRBVA-201ENST00000498804 316 ntBASIC2.39□□□□□ -2.03
VPS28Q9UK41 AC092436.3-201ENST00000511788 257 ntBASIC2.39□□□□□ -2.03
VPS28Q9UK41 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS28Q9UK41 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS28Q9UK41 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS28Q9UK41 AC078795.3-201ENST00000602913 472 ntBASIC2.39□□□□□ -2.03
VPS28Q9UK41 MIR6895-201ENST00000613497 78 ntBASIC2.39□□□□□ -2.03
VPS28Q9UK41 AC064859.1-201ENST00000624741 174 ntBASIC2.39□□□□□ -2.03
VPS28Q9UK41 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
VPS28Q9UK41 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.39□□□□□ -2.03
VPS28Q9UK41 RNU6-254P-201ENST00000363377 107 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 SNORD32B-201ENST00000364460 84 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 RNU6-1317P-201ENST00000364582 104 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 Y_RNA.530-201ENST00000384587 101 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 MTCYBP2-201ENST00000407745 171 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 EIF1AXP1-201ENST00000419267 435 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.38□□□□□ -2.03
VPS28Q9UK41 AC245102.2-201ENST00000448956 180 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.38□□□□□ -2.03
VPS28Q9UK41 PRELID3BP1-201ENST00000457142 540 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 AMD1P1-201ENST00000457220 922 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 AC132942.1-201ENST00000486753 483 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 RNU2-19P-201ENST00000517288 84 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 AL078605.1-201ENST00000603529 500 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 AP000654.2-201ENST00000605633 586 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 AC104458.1-201ENST00000608243 463 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 SNORA43.4-201ENST00000629559 138 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 AC024614.3-201ENST00000637860 256 ntBASIC2.38□□□□□ -2.03
VPS28Q9UK41 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
VPS28Q9UK41 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
VPS28Q9UK41 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
VPS28Q9UK41 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
VPS28Q9UK41 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.37□□□□□ -2.03
VPS28Q9UK41 MIR21-201ENST00000362134 72 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 Y_RNA.100-201ENST00000363141 102 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 RNU6-743P-201ENST00000364151 106 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 RNU6-877P-201ENST00000383868 107 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 RNA5SP201-201ENST00000410316 124 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 SRIP3-201ENST00000413200 219 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS28Q9UK41 MTND3P9-201ENST00000429526 346 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 C8orf59P1-201ENST00000429930 303 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 RPS15AP28-201ENST00000435088 386 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 RPS29P27-201ENST00000463711 170 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 AC055731.1-201ENST00000474387 401 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 TRBV12-1-201ENST00000479785 344 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 MTCO1P29-201ENST00000496868 288 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS28Q9UK41 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.37□□□□□ -2.03
VPS28Q9UK41 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.37□□□□□ -2.03
VPS28Q9UK41 AC026371.1-201ENST00000551867 419 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 PRELID2P1-201ENST00000552837 301 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS28Q9UK41 CYP4A27P-201ENST00000567218 190 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC2.37□□□□□ -2.03
VPS28Q9UK41 AC007229.1-201ENST00000590455 412 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 Z98751.3-201ENST00000604447 521 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 AC013412.1-201ENST00000610687 192 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 RMST_3.1-201ENST00000611651 109 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS28Q9UK41 AC005858.4-201ENST00000623191 700 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 AL450472.1-202ENST00000637286 180 ntBASIC2.37□□□□□ -2.03
VPS28Q9UK41 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.37□□□□□ -2.03
VPS28Q9UK41 AC005336.3-201ENST00000623833 2679 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS28Q9UK41 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
VPS28Q9UK41 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
VPS28Q9UK41 Y_RNA.6-201ENST00000362350 114 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 Y_RNA.89-201ENST00000363031 102 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS28Q9UK41 RNU6-933P-201ENST00000384424 107 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 MIR144-201ENST00000384886 86 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 MIR29C-201ENST00000385231 88 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 SNORA12-201ENST00000391162 147 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 RNU6-332P-201ENST00000391193 108 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS28Q9UK41 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS28Q9UK41 AC008549.1-201ENST00000512900 643 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS28Q9UK41 AC016256.1-201ENST00000547971 354 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 AC121758.2-201ENST00000553271 193 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS28Q9UK41 MIR5007-201ENST00000583098 95 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.36□□□□□ -2.03
VPS28Q9UK41 CTHRC1P1-201ENST00000605383 469 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
VPS28Q9UK41 AL136221.1-201ENST00000621449 509 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 MIR1248-201ENST00000629190 106 ntBASIC2.36□□□□□ -2.03
VPS28Q9UK41 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
VPS28Q9UK41 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
VPS28Q9UK41 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
VPS28Q9UK41 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.35□□□□□ -2.03
VPS28Q9UK41 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
VPS28Q9UK41 U3.9-201ENST00000363823 204 ntBASIC2.35□□□□□ -2.03
VPS28Q9UK41 RNU1-51P-201ENST00000365345 176 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms