Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.54□□□□□ -2
LIMA1Q9UHB6 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.54□□□□□ -2
LIMA1Q9UHB6 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.54□□□□□ -2
LIMA1Q9UHB6 MIR5007-201ENST00000583098 95 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 LARP7P1-201ENST00000605576 316 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 MIR6817-201ENST00000615588 66 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 AC009248.2-201ENST00000619826 254 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 MIR6766-201ENST00000622641 72 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 AC005858.4-201ENST00000623191 700 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 SNORD98-201ENST00000636377 67 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
LIMA1Q9UHB6 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LIMA1Q9UHB6 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.53□□□□□ -2
LIMA1Q9UHB6 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.53□□□□□ -2
LIMA1Q9UHB6 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.53□□□□□ -2
LIMA1Q9UHB6 CBX3P1-201ENST00000325243 554 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 RNU6-1013P-201ENST00000384180 107 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 RNU6-933P-201ENST00000384424 107 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 RNU6-1274P-201ENST00000384557 107 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 BTF3L4P2-201ENST00000392798 346 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 AL078595.1-201ENST00000404458 226 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 RNA5SP184-201ENST00000411071 108 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 AC078809.1-201ENST00000427601 140 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 AL133396.1-201ENST00000432048 687 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 AL645568.3-201ENST00000433683 316 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 MTND4LP16-201ENST00000440828 295 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.53□□□□□ -2
LIMA1Q9UHB6 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.53□□□□□ -2
LIMA1Q9UHB6 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.53□□□□□ -2
LIMA1Q9UHB6 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.53□□□□□ -2
LIMA1Q9UHB6 AC104435.1-201ENST00000483483 166 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.53□□□□□ -2
LIMA1Q9UHB6 AC114801.2-201ENST00000503825 781 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 AC016632.1-201ENST00000503994 196 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 AC022447.4-201ENST00000504053 364 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 RNA5SP356-201ENST00000515972 94 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 RNA5SP148-201ENST00000516527 94 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 AP005902.1-201ENST00000521358 186 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.53□□□□□ -2
LIMA1Q9UHB6 MIR3136-201ENST00000583498 78 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 AL034555.1-201ENST00000604816 211 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 AC104260.1-201ENST00000616660 539 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 U4atac.1-201ENST00000618345 95 ntBASIC2.53□□□□□ -2
LIMA1Q9UHB6 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
LIMA1Q9UHB6 AC009541.1-201ENST00000438279 2662 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AC092268.1-201ENST00000342691 405 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 RNU6-845P-201ENST00000362578 103 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 RNU6-525P-201ENST00000363685 104 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 SNORD116-11-201ENST00000383882 92 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 MIR196B-201ENST00000384852 84 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 MIR29B2-201ENST00000385055 81 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AL591034.2-201ENST00000402839 359 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AL590135.1-201ENST00000422215 156 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AC019205.3-201ENST00000424573 156 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 MTCO3P46-201ENST00000425787 232 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 SNRPEP8-201ENST00000442866 260 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AC016700.2-201ENST00000446011 156 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AC130509.1-201ENST00000464158 433 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AC015911.1-201ENST00000495111 156 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 SNORA31.16-201ENST00000516773 139 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 PRELID2P1-201ENST00000552837 301 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AC007375.1-201ENST00000554513 578 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 CPDP1-201ENST00000579660 283 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 UBE2V2P2-201ENST00000587677 504 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AC046143.2-201ENST00000609789 160 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 AL133215.3-201ENST00000609801 448 ntBASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.52□□□□□ -2.01
LIMA1Q9UHB6 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 RNU1-23P-201ENST00000363361 144 ntBASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 SNORA5B-201ENST00000363786 132 ntBASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 RNU6-767P-201ENST00000384132 107 ntBASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 Y_RNA.504-201ENST00000384481 104 ntBASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 SNORA26.3-201ENST00000391119 136 ntBASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 MTND1P11-201ENST00000456661 876 ntBASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 AC234781.5-201ENST00000508429 271 ntBASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 AC021269.2-201ENST00000532318 330 ntBASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 AC011712.1-201ENST00000588959 234 ntBASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 AC018889.1-201ENST00000605372 397 ntBASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 SNORA43.4-201ENST00000629559 138 ntBASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.51□□□□□ -2.01
LIMA1Q9UHB6 Y_RNA.166-201ENST00000363730 102 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 SNORD81.2-201ENST00000365153 76 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 RNU6-142P-201ENST00000384019 107 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 MIR521-1-201ENST00000384902 87 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 RNU6-510P-201ENST00000391239 108 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 NDUFB4P4-201ENST00000404822 243 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 HMGB3P2-201ENST00000411913 584 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms