Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 RNY4P36-201ENST00000391116 96 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 SNORA26.7-201ENST00000391288 122 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 MIR320B2-201ENST00000408479 138 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 Y_RNA.646-201ENST00000410980 101 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 AC243428.1-201ENST00000421099 264 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 RPL30P15-201ENST00000457129 321 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 snoU13.30-201ENST00000458951 104 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 Y_RNA.653-201ENST00000459091 95 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 AL590705.4-201ENST00000532209 134 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 AC007536.1-201ENST00000533382 349 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 RMST_6.1-201ENST00000611980 203 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 AC022140.2-201ENST00000623500 188 ntBASIC3.16□□□□□ -1.9
DDX56Q9NY93 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
DDX56Q9NY93 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
DDX56Q9NY93 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
DDX56Q9NY93 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.15□□□□□ -1.9
DDX56Q9NY93 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.15□□□□□ -1.9
DDX56Q9NY93 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
DDX56Q9NY93 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
DDX56Q9NY93 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
DDX56Q9NY93 RNU6-595P-201ENST00000363944 107 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 RNA5SP267-201ENST00000364893 126 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 SNORA51.4-201ENST00000364993 124 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 U8.9-201ENST00000365667 134 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 RNU6-378P-201ENST00000384324 107 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 RNU6-310P-201ENST00000384655 107 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 RNU6-331P-201ENST00000384724 107 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 RN7SKP58-201ENST00000411010 305 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 AC244505.4-201ENST00000434905 287 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 SSXP5-201ENST00000443473 287 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 MTCO3P10-201ENST00000455912 772 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 snoU13.6-201ENST00000458785 104 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 AF186996.7-201ENST00000492781 209 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 AC093303.1-201ENST00000514549 295 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
DDX56Q9NY93 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
DDX56Q9NY93 AL442067.2-201ENST00000614033 363 ntBASIC3.15□□□□□ -1.91
DDX56Q9NY93 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX56Q9NY93 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
DDX56Q9NY93 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
DDX56Q9NY93 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
DDX56Q9NY93 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.14□□□□□ -1.91
DDX56Q9NY93 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.14□□□□□ -1.91
DDX56Q9NY93 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.14□□□□□ -1.91
DDX56Q9NY93 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
DDX56Q9NY93 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.14□□□□□ -1.91
DDX56Q9NY93 MIR22-201ENST00000362190 85 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 Y_RNA.11-201ENST00000362375 109 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 Y_RNA.48-201ENST00000362710 103 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 VTRNA1-1-201ENST00000363120 99 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 RNU6-944P-201ENST00000364023 107 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 RNA5SP72-201ENST00000364442 117 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 SNORD32B-201ENST00000364460 84 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 MIR7-3-201ENST00000384898 110 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 MIR153-2-201ENST00000385225 87 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 SNORA48.7-201ENST00000391302 135 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 RNA5SP120-201ENST00000410900 112 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 AF228730.4-201ENST00000421457 183 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
DDX56Q9NY93 RNA5SP384-201ENST00000516615 116 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.14□□□□□ -1.91
DDX56Q9NY93 AC026470.2-201ENST00000561492 181 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 MIR4658-201ENST00000584344 65 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 AL133255.1-201ENST00000606374 441 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.14□□□□□ -1.91
DDX56Q9NY93 MIR7112-201ENST00000616126 65 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 AC090574.1-201ENST00000623186 233 ntBASIC3.14□□□□□ -1.91
DDX56Q9NY93 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.14□□□□□ -1.91
DDX56Q9NY93 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
DDX56Q9NY93 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
DDX56Q9NY93 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
DDX56Q9NY93 SNORA63.1-201ENST00000362493 131 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 RNU1-23P-201ENST00000363361 144 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 RNU6-694P-201ENST00000364071 147 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 SNORA25B-201ENST00000365507 128 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 RNU6-26P-201ENST00000383985 107 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 SNORA41-201ENST00000384675 132 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 RNU6-700P-201ENST00000391043 107 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.13□□□□□ -1.91
DDX56Q9NY93 AC011816.1-201ENST00000441346 546 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX56Q9NY93 UBE2V1P7-201ENST00000446395 340 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX56Q9NY93 RPL30P10-201ENST00000488148 337 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 AC097473.1-201ENST00000508142 408 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 170.3 ms